Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C50F7.4
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Query: C50F7.4 CE04242 succinyl-CoA synthetase beta chain status:Partially_confirmed SW:P53589 protein_id:AAA83304.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ligase-CoA CoA-ligase 295.6 6e-85 1
ATP-grasp ATP-grasp domain 193.0 1.7e-55 1
Vps26 Vacuolar protein sorting-associated protei 4.5 0.97 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Vps26 1/1 173 193 .. 1 21 [. 4.5 0.97
ATP-grasp 1/1 48 226 .. 1 190 [] 193.0 1.7e-55
ligase-CoA 1/1 274 413 .. 1 152 [. 295.6 6e-85
Alignments of top-scoring domains:
Vps26: domain 1 of 1, from 173 to 193: score 4.5, E = 0.97
*->FGppidIeIkldngeeRKtVe<-*
F++pidI+ ++ g++ K+++
C50F7.4 173 FKTPIDIQMGMTEGQSLKIAK 193
ATP-grasp: domain 1 of 1, from 48 to 226: score 193.0, E = 1.7e-55
*->eeaeenapalgvseaddsvvvkaqdlaggrgkaekcd.GlkfiGgvk
eaee ++++g+ ++vvkaq+laggrgk+ k+ +G+k+iGgv+
C50F7.4 48 KEAEEKWMSFGD----HEYVVKAQILAGGRGKG-KFInGTKGIGGVF 89
ltfeieevkedalellgknLvtkqtgvkgqpvpkalvleadkikreyyla
+t+e++++ e+ e++gk+Lvtkqt+ +g+ v k++++e+++ikre yla
C50F7.4 90 ITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETYLA 139
kvldrptpgpvviasleGGveieevaeklgnfdfpavlKarrdgydGkgq
++dr + gpvv+as++GG++ie+vaek++ ++++K+++d G ++
C50F7.4 140 VLMDRESNGPVVVASPDGGMDIEAVAEKTP----ERIFKTPIDIQMGMTE 185
yvareiakedglealkellvgaradlivelyvpFeeeeasllei<-*
+ +iak +++e+ +l+g +a+ i+ ly +F+ ++a+++ei
C50F7.4 186 GQSLKIAKDLQFEG---KLIGVAAQEIKRLYDLFIAVDATQVEI 226
ligase-CoA: domain 1 of 1, from 274 to 413: score 295.6, E = 6e-85
*->akynLnPsyIgldGnIGcvVNGAGLAMATmdiIklnGggPAnfLDvG
+++nLn yIg+dGnI+c+VNGAGLAMATmd+Ikl+Gg+PAnfLDvG
C50F7.4 274 HQFNLN--YIGMDGNIACLVNGAGLAMATMDLIKLHGGEPANFLDVG 318
GdatpgttvtdafklilsDpnVkaIlvnIFgGIvrCdeiAdGlkeaarev
G++t+++ v++a+++i+sDp+Vk++l+nIFgGIv+C++iA+G+++a++++
C50F7.4 319 GAVTEDA-VFNAVRIITSDPRVKCVLINIFGGIVNCATIANGVVSAVNKI 367
klkvPlVvRLaGTnvdegkseRkghagSglnilsadaacKnaALreAavk
+l+vP+VvRL+GTnvd++k +++++Sgl+il+a++ L+eAa+k
C50F7.4 368 GLNVPMVVRLEGTNVDAAK---QIMKKSGLKILTANN------LDEAAAK 408
vVesp<-*
+V+s+
C50F7.4 409 AVSSL 413