Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C52E4.1
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Query: C52E4.1 CE31896 cathepsin-like cysteine protease status:Confirmed TR:Q18783 protein_id:CAB01410.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C1 Papain family cysteine protease 351.5 1.3e-104 1
eIF6 eIF-6 family 4.5 3.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
eIF6 1/1 292 299 .. 200 207 .] 4.5 3.6
Peptidase_C1 1/1 85 326 .. 1 337 [] 351.5 1.3e-104
Alignments of top-scoring domains:
eIF6: domain 1 of 1, from 292 to 299: score 4.5, E = 3.6
*->lVANsngv<-*
lVANs+gv
C52E4.1 292 LVANSWGV 299
Peptidase_C1: domain 1 of 1, from 85 to 326: score 351.5, E = 1.3e-104
*->lPesfDWRe.Wkgga.VtpVKdQGiqCGSCWAFSavgalEgrycikt
+P++fD R++W+ ++++ ++dQ+ CGSCWAF+a++++++r ci t
C52E4.1 85 VPATFDSRTqWSECKsIKLIRDQA-TCGSCWAFGAAEMISDRTCIET 130
gtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYik
+ g ++ +S+ +L++C+g sCG+GC+G G++++A++++
C52E4.1 131 K----GAQQPIISPDDLLSCCG-----S--SCGNGCEG-GYPIQALRWWD 168
keqIsnNgGlvtEsdYek.gCkPYtdf.PCgkdggndtyypCpgkaydpn
+G+vt++dY++ gCkPY+ + PC +Cp++
C52E4.1 169 S------KGVVTGGDYHGaGCKPYP-IaPCTSG-------NCPES----- 199
dTgtCkynckknskypktyakikgygdvpyn.vsTydEealqkalaknGP
+T++C +c+++ y ++yak+k++g+ +y ++ + +++q++++ nGP
C52E4.1 200 KTPSCSMSCQSG--YSTAYAKDKHFGVSAYAvPK--NAASIQAEIYANGP 245
vsVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHAV
v++a+ ++e DF+ YksG vYkht ag+ g +HA+
C52E4.1 246 VEAAFSVYE----DFYKYKSG-------VYKHT-AGKYLG------GHAI 277
liVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapiedk
+i+G+Gte+ g
C52E4.1 278 KIIGWGTES-G--------------------------------------- 287
gkdYWIVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
+YW+V+NSWG +WGE G+f+i+Rg + +CGI+s ++++
C52E4.1 288 -SPYWLVANSWGVNWGESGFFKIYRGDD-----QCGIESAVVAGK 326