hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C53C9.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C53C9.2  CE27882    status:Confirmed SW:Q09936 protein_id:AAB52603.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
calponin Calponin family repeat                          75.8    6.1e-22   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
calponin   1/6      29    54 ..     1    26 []    22.6  1.9e-05
calponin   2/6      73    98 ..     1    26 []    11.8    0.042
calponin   3/6     119   144 ..     1    26 []     3.1       21
calponin   4/6     161   189 ..     1    26 []    13.8     0.01
calponin   5/6     214   234 ..     6    26 .]     5.3      4.6
calponin   6/6     255   280 ..     1    26 []    31.8  2.6e-08

Alignments of top-scoring domains:
calponin: domain 1 of 6, from 29 to 54: score 22.6, E = 1.9e-05
                   *->iGLqmGtnKgAsqaGmtaYGtprrli<-*
                      +  q GtnK+  q+Gmta G+pr  i
     C53C9.2    29    LSQQAGTNKFETQKGMTAVGMPRWNI    54

calponin: domain 2 of 6, from 73 to 98: score 11.8, E = 0.042
                   *->iGLqmGtnKgAsqaGmtaYGtprrli<-*
                      + +q Gtn++Asq+G t  G  r  +
     C53C9.2    73    LRVQCGTNQYASQKGETPIGASRFQV    98

calponin: domain 3 of 6, from 119 to 144: score 3.1, E = 21
                   *->iGLqmGtnKgAsqaGmtaYGtprrli<-*
                      i  q G    AsqaG  + G  r  +
     C53C9.2   119    IPKQAGDYGLASQAGEVSMGGHRNQV    144

calponin: domain 4 of 6, from 161 to 189: score 13.8, E = 0.01
                   *->iGLqmGtnKgAsqaGmta...YGtprrli<-*
                      +  q Gtn +Asq Gm+a+++ G  r+
     C53C9.2   161    LCFQNGTNLFASQTGMSAppgLGAVRQAT    189

calponin: domain 5 of 6, from 214 to 234: score 5.3, E = 4.6
                   *->GtnKgAsqaGmtaYGtprrli<-*
                      G nK+A qaG  ++ + r ++
     C53C9.2   214    GQNKFATQAGSGGFLKVRDVL    234

calponin: domain 6 of 6, from 255 to 280: score 31.8, E = 2.6e-08
                   *->iGLqmGtnKgAsqaGmtaYGtprrli<-*
                      + Lq GtnK Asq Gmt++Gtpr
     C53C9.2   255    VPLQSGTNKLASQRGMTGFGTPRNTQ    280

[DB home][top]