hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C54C6.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C54C6.1  CE05493  locus:rpl-37 60S ribosomal protein L37 status:Partially_confirmed SW:P49622 protein_id:CAB00854.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Ribosomal_L37e Ribosomal protein L37e                   125.1    4.7e-34   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L37e   1/1       2    55 ..     1    55 []   125.1  4.7e-34

Alignments of top-scoring domains:
Ribosomal_L37e: domain 1 of 1, from 2 to 55: score 125.1, E = 4.7e-34
                   *->tkGTpSfGKRnnktHirCRRCGrkSyHvqKkrCAaCGyprsarlRkY
                      tkGT++fGK++ k+H++C+RCG++S+H+qKkrCA+CGy+ +a++R+Y
     C54C6.1     2    TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQ-DAKKRTY 47

                   nWsaKakr<-*
                   nW+aK++r
     C54C6.1    48 NWGAKSIR    55

[DB home][top]