Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C54D1.5
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Query: C54D1.5 CE30916 status:Partially_confirmed TN:AAC48152 protein_id:AAC48152.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
laminin_EGF Laminin EGF-like (Domains III and V) 452.5 3.6e-132 11
laminin_Nterm Laminin N-terminal (Domain VI) 375.4 1.9e-113 1
laminin_B Laminin B (Domain IV) 111.6 9.6e-30 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.5 0.51 1
LEA Late embryogenesis abundant protein 5.1 6.7 1
DUF712 Protein if unknown function (DUF712) 4.2 7.8 1
DUF567 Protein of unknown function (DUF567) 4.1 5.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF567 1/1 132 154 .. 1 23 [. 4.1 5.7
laminin_Nterm 1/1 36 270 .. 1 264 [] 375.4 1.9e-113
laminin_EGF 1/11 272 329 .. 1 59 [] 39.9 6.6e-10
zf-C3HC4 1/1 356 372 .. 37 50 .] 5.5 0.51
laminin_EGF 2/11 332 385 .. 1 59 [] 49.1 1.4e-12
laminin_EGF 3/11 388 432 .. 1 59 [] 57.1 7.4e-15
laminin_EGF 4/11 435 485 .. 1 59 [] 60.1 1e-15
laminin_B 1/1 550 685 .. 1 148 [] 111.6 9.6e-30
laminin_EGF 5/11 686 718 .. 27 59 .] 10.8 0.15
laminin_EGF 6/11 721 767 .. 1 59 [] 56.1 1.5e-14
laminin_EGF 7/11 770 817 .. 1 59 [] 29.9 4.7e-07
laminin_EGF 8/11 820 875 .. 1 59 [] 51.5 3.1e-13
laminin_EGF 9/11 893 928 .. 13 59 .] 47.2 5e-12
laminin_EGF 10/11 931 976 .. 1 59 [] 73.8 1.2e-19
laminin_EGF 11/11 979 1029 .. 1 59 [] 53.0 1.1e-13
LEA 1/1 1068 1104 .. 34 75 .] 5.1 6.7
DUF712 1/1 1187 1208 .. 111 132 .] 4.2 7.8
Alignments of top-scoring domains:
DUF567: domain 1 of 1, from 132 to 154: score 4.1, E = 5.7
*->gvvvsseylspepvdLtvwrKsl<-*
++ v +++sp p+++t+ +K +
C54D1.5 132 ITYVRLKFISPRPESFTIYKKTH 154
laminin_Nterm: domain 1 of 1, from 36 to 270: score 375.4, E = 1.9e-113
*->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC
C P ++N+a+n++ + +t+TCG++ P ++C++s++++ C
C54D1.5 36 CVPDFVNAAFNLE--VQVTNTCGTKRPTKFCVQSGHTG----QRSVC 76
flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn
+ CD + + sHp+ +l+d + +++ tWWQS tm++G qYp
C54D1.5 77 ETCDDRHEG------FSHPAKYLTDFNVGNN-ETWWQSDTMQEGQQYPTT 119
VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay
++tL L+++F+iTYv++kF ++RPE+++i++ + + W p+q+Y++
C54D1.5 120 TNLTLVLGKSFDITYVRLKFI-SPRPESFTIYKKTHTDS-EWEPWQFYSG 167
dDsECeatYpgiprrpirtgraeddvlCTSrYSdiePlteGEViFsvLeG
+ C+atY + +r+pi + e+ + CT ++Sdi+P t+G+++Fs+LeG
C54D1.5 168 S---CRATYGLSDRAPILP-GNEATAQCTKEFSDISPITGGNIAFSTLEG 213
RPsadifDpYSprlQewlkaTniRitLtRLhTLGDnLldsSHRelkeLdp
RPsa f+ S++lQ w++a iRi L+R++T+GD+++ dp
C54D1.5 214 RPSAHAFEE-SEVLQKWVTASAIRISLNRMNTFGDEVFK---------DP 253
evlekYYYAIsDivVGG<-*
+vl++YYYAIsD++VGG
C54D1.5 254 QVLRSYYYAISDFAVGG 270
laminin_EGF: domain 1 of 11, from 272 to 329: score 39.9, E = 6.6e-10
*->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC
C Cn+h+ ++C +++ +ge+ +C+ C +n++G +C++C
C54D1.5 272 CKCNGHA----SECVG----SssvdGENRLVCR-CEHNTQGADCNEC 309
kpGyyglpsg....dpgqgC<-*
+p y ++p++++++ ++ C
C54D1.5 310 LPFYNDRPWRsgtsVEANEC 329
zf-C3HC4: domain 1 of 1, from 356 to 372: score 5.5, E = 0.51
*->rWls..gntt.vkCplC<-*
++++ +gnt++v+C++C
C54D1.5 356 HCIDcqGNTQgVHCEQC 372
laminin_EGF: domain 2 of 11, from 332 to 385: score 49.1, E = 1.4e-12
*->CdCnphGslsddtCdsddelf..geetGqClkCkpnvtGrrCdrCkp
C+C+ ++ +C++d+ lf++++++G+C +C+ n++G +C++C
C54D1.5 332 CNCSQLS----NRCYFDQQLFeeTGHGGHCIDCQGNTQGVHCEQCIA 374
GyyglpsgdpgqgC<-*
+++++ ++ C
C54D1.5 375 NHWRR---PGENYC 385
laminin_EGF: domain 3 of 11, from 388 to 432: score 57.1, E = 7.4e-15
*->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
C Cn+ Gsls +Cd G C+ Ckp+vtGr Cd+C++G+
C54D1.5 388 CGCNEIGSLS-TQCDN--------EGKCQ-CKPGVTGRFCDQCLDGF 424
yglpsgdpgqgC<-*
y++ + gC
C54D1.5 425 YDF---STN-GC 432
laminin_EGF: domain 4 of 11, from 435 to 485: score 60.1, E = 1e-15
*->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG
C C Gsl+++++Cds ++G C+ Ck nv+Gr+Cd CkpG
C54D1.5 435 CGCETSGSLNNqPRCDS-------SSGSCS-CKLNVEGRQCDKCKPG 473
yyglpsgdpgqgC<-*
y++l++ + +gC
C54D1.5 474 YFDLST-ENQFGC 485
laminin_B: domain 1 of 1, from 550 to 685: score 111.6, E = 9.6e-30
*->YWrlPekFLGDkvtsYGGkLkYsvafdgPvegvgstsnseadViLkG
Y+ +Pe+FLGD++ sY+++L +++++ +t+ + d+i+ G
C54D1.5 550 YFVAPEQFLGDQRSSYNQDLVFTLKVAK-----HVTNQDVKDIIIVG 591
n.glrlsvplraqgnslrPseervkvtvrlhEtfwkdfnsqpaKavtred
+++ ls+ + aqgn+ P e + + +r+h +f + p + d
C54D1.5 592 AdRQELSTSITAQGNPF-PTTEAQTYRFRVHADP--YFGWYPR--INELD 636
llsvLanLtaiLIRATYNsakqaqsrLddVsLeiArpgaqgpaEdvvAae
+ +L+n+tai+IR+TY s k ++ L++V+L +A ++ a A++
C54D1.5 637 FIGILSNITAIKIRGTY-SYKDIGY-LSNVNLGTAGVAPS-AANPKQATW 683
VE<-*
+E
C54D1.5 684 IE 685
laminin_EGF: domain 5 of 11, from 686 to 718: score 10.8, E = 0.15
*->qClkCkpnvtGrrCdrCkpGyyglpsg..dpgqgC<-*
+C C+p++ G+ C+ C+ G+ + ++++ + C
C54D1.5 686 HCE-CLPGFVGQFCESCESGFRRETKFggPFN-HC 718
laminin_EGF: domain 6 of 11, from 721 to 767: score 56.1, E = 1.5e-14
*->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
CdC++h+ +C e+G C C +n++G+ C+rC+ Gy
C54D1.5 721 CDCHNHS----NSCEA-------ESGSCI-CEHNTAGDTCERCARGY 755
yglpsg.dpgqgC<-*
yg++++++ + +C
C54D1.5 756 YGDALQgTEE-DC 767
[output cut off at A = 10 top alignments]