hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C54E4.2
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Query:  C54E4.2  CE20611    status:Confirmed TR:O44466 protein_id:AAK29794.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
thyroglobulin_1 Thyroglobulin type-1 repeat              56.2    6.9e-13   1
efhand          EF hand                                  15.7      0.019   2
HupH_C          HupH hydrogenase expression protein,      3.1          7   1
Rib_hydrolayse  ADP-ribosyl cyclase                       1.4        9.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
efhand            1/2      80   102 ..     1    23 [.    12.1     0.18
efhand            2/2     126   141 ..    14    29 .]     3.6       42
Rib_hydrolayse    1/1     159   172 ..     1    16 [.     1.4      9.6
thyroglobulin_1   1/1     150   207 ..     1    81 []    56.2  6.9e-13
HupH_C            1/1     214   226 .]    37    49 ..     3.1        7

Alignments of top-scoring domains:
efhand: domain 1 of 2, from 80 to 102: score 12.1, E = 0.18
                   *->elkeaFkefDkDgDGkIsfeEfk<-*
                      e+  +F+  D ++DGk+s+ E++
     C54E4.2    80    EVGWMFNQWDGNQDGKLSKAELR    102

efhand: domain 2 of 2, from 126 to 141: score 3.6, E = 42
                   *->DGkIsfeEfkaalkkl<-*
                      DG Is++E++++++
     C54E4.2   126    DGSISVDEWCDCFTFS    141

Rib_hydrolayse: domain 1 of 1, from 159 to 172: score 1.4, E = 9.6
                   *->TkhLqdifLGRCKDYE<-*
                       +hL  +fL RC D E
     C54E4.2   159    -PHLLGVFLPRC-DLE    172

thyroglobulin_1: domain 1 of 1, from 150 to 207: score 56.2, E = 6.9e-13
                   *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp
                      C + +++v               +++ g+++P Cd +GfYkp QC+
     C54E4.2   150    CHKAKHDV--------------DPHLLGVFLPRCDLEGFYKPEQCH- 181

                   SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-*
                         G CWCVD++ G+e   +r++++   p+C
     C54E4.2   182 -----DGNCWCVDRY-GREFDKSRVQNTL--PDC    207

HupH_C: domain 1 of 1, from 214 to 226: score 3.1, E = 7
                   *->mSpeDrtFLdetL<-*
                      m++eD++FL e+L
     C54E4.2   214    MTEEDIAFLRERL    226

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