hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C54G4.1
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Query:  C54G4.1  CE05507   Protein kinase C terminal domain status:Partially_confirmed TR:Q18846 protein_id:CAA99814.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pkinase       Protein kinase domain                     531.1   7.7e-156   2
pkinase_C     Protein kinase C terminal domain           35.0    1.6e-09   1
Phage_holin_3 Phage holin family (Lysis protein S)        3.9        6.9   1
trp_syntA     Tryptophan synthase alpha chain             2.6        7.9   1
Myelin_PLP    Myelin proteolipid protein (PLP or lipo     2.5        5.7   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Myelin_PLP      1/1      16    31 ..   272   288 .]     2.5      5.7
Phage_holin_3   1/1     256   269 ..    91   104 .]     3.9      6.9
pkinase         1/2      17   284 ..     1   294 []   264.9  1.1e-75
pkinase_C       1/1     285   348 ..     1    70 []    35.0  1.6e-09
trp_syntA       1/1     410   439 ..   233   265 .]     2.6      7.9
pkinase         2/2     386   666 ..     5   294 .]   266.0  4.9e-76

Alignments of top-scoring domains:
Myelin_PLP: domain 1 of 1, from 16 to 31: score 2.5, E = 5.7
                   *->NyAVLKflgRkdkytkf<-*
                      N+A L++lg++ +y k+
     C54G4.1    16    NFALLRVLGKG-AYGKV    31

Phage_holin_3: domain 1 of 1, from 256 to 269: score 3.9, E = 6.9
                   *->dkIgeflkrfinKr<-*
                      d Ig +l ++++Kr
     C54G4.1   256    DFIGQLLEKKLEKR    269

pkinase: domain 1 of 2, from 17 to 284: score 264.9, E = 1.1e-75
                   *->yelleklGeGsfGkVykakhkd..ktgkiVAvKilkkekesikek..
                      + ll++lG+G++GkV++++ + +++++ i+A+K+l+k++  +k k+
     C54G4.1    17    FALLRVLGKGAYGKVFLVRKVGgkDHNTIYAMKVLRKTRVLTKQKtl 63

                   .rflrEiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylr
                   +++ +E q+l rL++ p++v+l+++f+ td++l++vmEy++gG+Lf++l
     C54G4.1    64 eHTMAERQVLERLRgTPFLVNLFYAFQ-TDTKLHIVMEYVRGGELFTHLC 112

                   rnggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvK
                   ++g +++ + a++++ +++ +++ LH +++++RDLK eNILlde+ g+vK
     C54G4.1   113 SRG-HFDLEAARFVIAELVVAIDSLHQRKVIYRDLKLENILLDEE-GHVK 160

                   iaDFGLArlle..sssklttfvGTpwYmmAPEvileg..rgysskvDvWS
                   ++DFGL++l+ ++   ++++++GT++Ym +PEv +++++ gys  vD+WS
     C54G4.1   161 LTDFGLSKLFLpgELDRANSYCGTIEYM-SPEV-INRpeGGYSDVVDWWS 208

                   lGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktri
                   lGvi +Elltg                           +Pf     +
     C54G4.1   209 LGVISFELLTG--------------------------CSPFTV---DGAQ 229

                   dpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatake
                   +  + + + i++   + p+p++   +++d++ ++L+k  +kR+G     e
     C54G4.1   230 NSSKDIAKRIMT--KKVPFPKTMDVDARDFIGQLLEKKLEKRLGYNGVDE 277

                   ilnhpwf<-*
                   i+nh+++
     C54G4.1   278 IKNHKFM    284

pkinase_C: domain 1 of 1, from 285 to 348: score 35.0, E = 1.6e-09
                   *->reIdWdkLEnkeiePPFKPkiksprDtsNFDkeFTrekPvLTPvDsv
                      ++IdWd   ++  +P   P+i ++ Dt  F  eFT+++P  +P++s+
     C54G4.1   285    SSIDWDAAVKRTLKPVIVPRIGHDLDTQFFSAEFTSQPPLYSPAESP 331

                   lirsiDQeeFrGFSYvnsPersf<-*
                   l ++     FrG SYv+ P
     C54G4.1   332 LNANT---LFRGYSYVS-PS--V    348

trp_syntA: domain 1 of 1, from 410 to 439: score 2.6, E = 7.9
                   *->VdiIeknaegeeqmleelyellslagkmKkatk<-*
                      V+i++++  +++q ++++ e+   ++++ + ++
     C54G4.1   410    VKIVSQKFASQAQREARILEM---VQGHPNIVQ    439

pkinase: domain 2 of 2, from 386 to 666: score 266.0, E = 4.9e-76
                   *->eklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflrEiqi
                      + lG+G+f++V++++++  +g ++AvKi++   +  +   ++rE++i
     C54G4.1   386    GLLGKGAFSVVRRCERV-VDGAQFAVKIVS--QKFASQ--AQREARI 427

                   lkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrrnggplsek
                   l ++++HpNIv+l++v   ++ h+ylvmE + g +L++++r+   +++e
     C54G4.1   428 LEMVQgHPNIVQLHDVHS-DPLHFYLVMEILTGNELLERIRKLE-RFTES 475

                   eakkialQilrGleYLHsngivHRDLKpeNILlden..dgtvKiaDFGLA
                   ea +i++Q++++++YLH+++ivHRDLKpeNIL+++ ++   +++ DFG+A
     C54G4.1   476 EAADIMRQLVSAVKYLHDKRIVHRDLKPENILFESIdsSARLRLVDFGFA 525

                   rlle.......................sssklttfvGTpwYmmAPEvi.l
                   rll ++ +++ ++ +  ++  +   +++s +  t + T+ Y  APEv+++
     C54G4.1   526 RLLPnsmeqqlksvqvlrkmygliahnHSLHSETPCFTLQYA-APEVLdV 574

                   eg..rgysskvDvWSlGviLyElltggplfpgadlpaftggdevdqliif
                    +++++y  ++D WSlGv+L+ +l+g
     C54G4.1   575 GDsqPEYNEQCDLWSLGVVLFTMLSG------------------------ 600

                   vlklPfsdelp.ktridpleelfriikrpglrlplpsncSeelkdLlkkc
                     + Pf+ + +++  +++++++ r      ++ + + n+S ++k L++++
     C54G4.1   601 --QVPFHARSRqESATEIMQRICRAEFS--FTGDAWTNVSADAKNLITGL 646

                   LnkDPskRpGsatakeilnhpwf<-*
                   L++DP+kR+   +++e+ +h w+
     C54G4.1   647 LTVDPKKRL---SMQELTAHMWL    666

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