Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C55A6.2
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Query:  C55A6.2  CE29733   Human KIAA0173 protein like status:Partially_confirmed TR:O17720 protein_id:CAB02862.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
TTL      Tubulin-tyrosine ligase family                 449.2   3.4e-131   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TTL        1/1     115   423 ..     1   330 []   449.2 3.4e-131

Alignments of top-scoring domains:
TTL: domain 1 of 1, from 115 to 423: score 449.2, E = 3.4e-131
                   *->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
                      +r  ++    +q++N+FP+s e+t KD+l++ni+r++++fg++   f
     C55A6.2   115    MRELMP----WQRLNQFPRSTELTKKDRLYENIERSKSIFGES---F 154

                   dflprtfilptdlrefvdyfekrereg........qdntWIvKPsasaRG
                   df+p+++++p ++r+++++f + ++e+   +++  ++  +IvKP +s +G
     C55A6.2   155 DFIPEFYVTPRENRKMENAFVRVAKEIaaaggelcFPGEFIVKPTNSRQG 204

                   rGIritnklsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDv
                   +GI++ n++++ip               +++pl+V++Y+++P+L+++
     C55A6.2   205 KGIFFANSMADIP---------------AEGPLLVSRYLKDPYLVNN--- 236

                   gkrKFDlRlYVLvtsvdPLriYvYregllRFAsvkYsp..lsdlddvemH
                     +KFDlR+YV vts++PL++YvY+egl+R+As++Y+++ +s ++++++H
     C55A6.2   237 --HKFDLRIYVAVTSFYPLVAYVYSEGLARLASRPYDTsaSSADSNEYVH 284

                   LTNysiqkkssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlq
                   LTNysi+k+s++++r++ ++ e+ ghkw+l +l +y e++g+d++ ++l+
     C55A6.2   285 LTNYSINKNSTSFVRNESMSSEDLGHKWTLGALLRYVENEGKDAKLLMLR 334

                   iesiiiktilaae..iveasrlnvaplyncFELyGfDimlkwdDDenlkP
                   ie++i+k++l+ ++++++asr n+++ +  FEL+GfD+++    D++lkP
     C55A6.2   335 IEDLIVKSLLSIQnsVATASRTNLRFACTNFELFGFDVLV----DQALKP 380

                   wLLEVNasPslhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
                   wLLEVN+sPsl+++ +ld+ lk +li+d+Ln  l +vp  ++k+i
     C55A6.2   381 WLLEVNLSPSLACDAPLDSLLKTRLIADLLN--LACVPLLDRKII    423



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