Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C55A6.2
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Query: C55A6.2 CE29733 Human KIAA0173 protein like status:Partially_confirmed TR:O17720 protein_id:CAB02862.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TTL Tubulin-tyrosine ligase family 449.2 3.4e-131 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TTL 1/1 115 423 .. 1 330 [] 449.2 3.4e-131
Alignments of top-scoring domains:
TTL: domain 1 of 1, from 115 to 423: score 449.2, E = 3.4e-131
*->irlderyrllhqaiNhFPgsyeitrKDllwknikrqqkdfgrkgdef
+r ++ +q++N+FP+s e+t KD+l++ni+r++++fg++ f
C55A6.2 115 MRELMP----WQRLNQFPRSTELTKKDRLYENIERSKSIFGES---F 154
dflprtfilptdlrefvdyfekrereg........qdntWIvKPsasaRG
df+p+++++p ++r+++++f + ++e+ +++ ++ +IvKP +s +G
C55A6.2 155 DFIPEFYVTPRENRKMENAFVRVAKEIaaaggelcFPGEFIVKPTNSRQG 204
rGIritnklsqipkwvddfkdNpfvsqiqrrplvVQkYIerPLLidgeDv
+GI++ n++++ip +++pl+V++Y+++P+L+++
C55A6.2 205 KGIFFANSMADIP---------------AEGPLLVSRYLKDPYLVNN--- 236
gkrKFDlRlYVLvtsvdPLriYvYregllRFAsvkYsp..lsdlddvemH
+KFDlR+YV vts++PL++YvY+egl+R+As++Y+++ +s ++++++H
C55A6.2 237 --HKFDLRIYVAVTSFYPLVAYVYSEGLARLASRPYDTsaSSADSNEYVH 284
LTNysiqkkssnYsrlnedynepvghkwslqnlwlyleemgidkeeiwlq
LTNysi+k+s++++r++ ++ e+ ghkw+l +l +y e++g+d++ ++l+
C55A6.2 285 LTNYSINKNSTSFVRNESMSSEDLGHKWTLGALLRYVENEGKDAKLLMLR 334
iesiiiktilaae..iveasrlnvaplyncFELyGfDimlkwdDDenlkP
ie++i+k++l+ ++++++asr n+++ + FEL+GfD+++ D++lkP
C55A6.2 335 IEDLIVKSLLSIQnsVATASRTNLRFACTNFELFGFDVLV----DQALKP 380
wLLEVNasPslhsttkldaelkaplirdvLnlalsvvppdkekdi<-*
wLLEVN+sPsl+++ +ld+ lk +li+d+Ln l +vp ++k+i
C55A6.2 381 WLLEVNLSPSLACDAPLDSLLKTRLIADLLN--LACVPLLDRKII 423