Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C55B7.4
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Query: C55B7.4 CE09015 acyl-CoA dehydrogenase status:Confirmed TR:Q966M3 protein_id:AAK68275.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Acyl-CoA_dh Acyl-CoA dehydrogenase, C-terminal doma 236.0 5.2e-67 1
Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain 172.4 7.4e-48 1
Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal doma 112.6 6.4e-30 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Acyl-CoA_dh_N 1/1 48 164 .. 1 132 [] 112.6 6.4e-30
Acyl-CoA_dh_M 1/1 166 267 .. 1 106 [] 172.4 7.4e-48
Acyl-CoA_dh 1/1 271 420 .. 1 162 [] 236.0 5.2e-67
Alignments of top-scoring domains:
Acyl-CoA_dh_N: domain 1 of 1, from 48 to 164: score 112.6, E = 6.4e-30
*->LseEqemlratvREkFaqeeiaPyaAeGRRvDksgefPalrelikaL
L+e + + tvR kF + + P++ e +Dk ++++ + ++
C55B7.4 48 LTENELFFADTVR-KFSKDVVKPLVRE---MDKYSKMS--PIVTQGV 88
gqlGllginvPEeyGGaGadylaRFmLHAQVaalviEElarvcAstgvil
+++Gl+g++vPEeyGG+G++++ a +viEEla+++ s++
C55B7.4 89 FENGLMGVHVPEEYGGSGSSFFN--------AMIVIEELAKTDPSVSAMV 130
svhssLgqnpilkfGseEQKkkyLpqltsGdliga<-*
++h++L ++ i+ G+eEQK kyLp+l s d +++
C55B7.4 131 GIHNTLPVSMIIDYGTEEQKLKYLPRLCS-DSLAS 164
Acyl-CoA_dh_M: domain 1 of 1, from 166 to 267: score 172.4, E = 7.4e-48
*->AlTEPgAGSDvgSlkTtAekkEGddyiLNGsKmWITNGgqAdwyiVl
+++E gAGSD+++lkT A+++ Gd+ ++ G+KmWITN+g+A +++V+
C55B7.4 166 CISESGAGSDAFALKTIAKRD-GDHFLISGTKMWITNSGEAQVFVVF 211
AvTDpakkvpgkkgitaFlVekdtpGfsiGkKedKLGlRgSdTcELiFED
A+ Dp+ +++kgit F+Ve++ G+++ k edKLG+R+S+Tc++ F++
C55B7.4 212 ANADPS---QKYKGITCFIVERSADGLTVDKEEDKLGIRASSTCQVHFDN 258
vrvPesniL<-*
vrv +s+iL
C55B7.4 259 VRVHKSAIL 267
Acyl-CoA_dh: domain 1 of 1, from 271 to 420: score 236.0, E = 5.2e-67
*->GkGfkiametLnlagRlgiAaqalGiArrAleeAveYAkeRkqFGak
GkG+k+a e+Ln agR++i+aq++G+A++++++++ Y ++R+qFG +
C55B7.4 271 GKGYKYAIECLN-AGRIAIGAQMIGLAQGCFDQTIPYLQQREQFG-Q 315
pIadfQlvqfkLAdmateleaaRllvyrAAwl.DqGkdarleaamAKlfa
+++dfQ+ q+++A+++te+eaaRllvy AA++++ G ++ +eaamAKlfa
C55B7.4 316 RLIDFQGLQHQIAQARTEIEAARLLVYNAARMkEYGIPYVREAAMAKLFA 365
teaAvevadeAvQihGGyGytkegpnarerdavSypveRlyRDarilrIy
+ +A+ ++v ++GG G+tke +p+e++yRDa i++Iy
C55B7.4 366 SQVATSTSAQCVKWLGGVGFTKE-----------FPAEKFYRDAMIGEIY 404
EGTsEIqrliIaRall<-*
EGTs+Iq+++Ia+ +
C55B7.4 405 EGTSNIQLNTIAKLID 420