Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C55B7.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C55B7.3  CE09014   protein-tyrosine phosphatase status:Partially_confirmed TR:Q966M2 protein_id:AAK68274.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              344.2    1.4e-99   1
DSPc          Dual specificity phosphatase, catalytic    20.9    0.00014   1
CorA          CorA-like Mg2+ transporter protein          6.4       0.57   1
DUF511        Protein of unknown function (DUF511)        2.6        7.6   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
DUF511          1/1      38    61 ..     1    26 [.     2.6      7.6
DSPc            1/1     239   270 ..    94   125 ..    20.9  0.00014
Y_phosphatase   1/1      80   317 ..     1   274 []   344.2  1.4e-99
CorA            1/1     314   326 ..   386   398 .]     6.4     0.57

Alignments of top-scoring domains:
DUF511: domain 1 of 1, from 38 to 61: score 2.6, E = 7.6
                   *->lskakleyvqlrlEeKltarqkpewV<-*
                       +k++l  vq +lE K+ +  ++e V
     C55B7.3    38    -KKQILKFVQRTLE-KMPQGLRAEFV    61

DSPc: domain 1 of 1, from 239 to 270: score 20.9, E = 0.00014
                   *->eavdFIdkarqkggkVLVHCqAGiSRSAtlii<-*
                      ++ + +++ar + g++ VHC AGi R++++++
     C55B7.3   239    AVLELLENARPSKGPIVVHCSAGIGRTGSVVM    270

Y_phosphatase: domain 1 of 1, from 80 to 317: score 344.2, E = 1.4e-99
                   *->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
                         KNRykd+ + D++RVkL +++++ YI+Any+ +p        ++
     C55B7.3    80    EAGKNRYKDVGCLDNNRVKLEgpWPHEYIHANYVATP--------TN 118

                   pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
                   pk++I+TQ+Pl++T++DFW+M+++ kv++I ML++l Ekg    K C +Y
     C55B7.3   119 PKRFICTQAPLEKTCADFWYMCYQDKVEYIFMLCNLLEKGA--RK-CFEY 165

                   WPeeggeeggsltyG....ditVtlvseekk.....ddddytvRtleltn
                   +P+   ++g+ + + +++++i+V+++s  +++ ++++++++t ++++++
     C55B7.3   166 FPS---KKGDVMDFEeggqKISVKCESSVTYsfrsdAKANVTATEIVIEG 212

                   .gdeskneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvr
                   +g             ++tr+ thyh+ +WPD+gvP+   +++l++l+  r
     C55B7.3   213 pG-------------EKTRKTTHYHWNDWPDRGVPAA-DMAVLELLENAR 248

                   ksqsqenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqql
                    s++                    PivVHCSAGiGRTG ++ ++++++ql
     C55B7.3   249 PSKG--------------------PIVVHCSAGIGRTGSVVMLEYIMDQL 278

                   eaegvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
                    a++ ++d ++i+ ++R+qR++++Qt++QY+F++++il+
     C55B7.3   279 LAGQIIDDGEKILVKIREQRNNSIQTDAQYLFVHQVILN    317

CorA: domain 1 of 1, from 314 to 326: score 6.4, E = 0.57
                   *->vllsyfrrKgwlg<-*
                      v+l+yfr+K++++
     C55B7.3   314    VILNYFRKKKLME    326



[DB home][top]