Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C55B7.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C55B7.3 CE09014 protein-tyrosine phosphatase status:Partially_confirmed TR:Q966M2 protein_id:AAK68274.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Y_phosphatase Protein-tyrosine phosphatase 344.2 1.4e-99 1
DSPc Dual specificity phosphatase, catalytic 20.9 0.00014 1
CorA CorA-like Mg2+ transporter protein 6.4 0.57 1
DUF511 Protein of unknown function (DUF511) 2.6 7.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF511 1/1 38 61 .. 1 26 [. 2.6 7.6
DSPc 1/1 239 270 .. 94 125 .. 20.9 0.00014
Y_phosphatase 1/1 80 317 .. 1 274 [] 344.2 1.4e-99
CorA 1/1 314 326 .. 386 398 .] 6.4 0.57
Alignments of top-scoring domains:
DUF511: domain 1 of 1, from 38 to 61: score 2.6, E = 7.6
*->lskakleyvqlrlEeKltarqkpewV<-*
+k++l vq +lE K+ + ++e V
C55B7.3 38 -KKQILKFVQRTLE-KMPQGLRAEFV 61
DSPc: domain 1 of 1, from 239 to 270: score 20.9, E = 0.00014
*->eavdFIdkarqkggkVLVHCqAGiSRSAtlii<-*
++ + +++ar + g++ VHC AGi R++++++
C55B7.3 239 AVLELLENARPSKGPIVVHCSAGIGRTGSVVM 270
Y_phosphatase: domain 1 of 1, from 80 to 317: score 344.2, E = 1.4e-99
*->NkeKNRykdilpyDhtRVkLk..egsDYINAnyidgpqsrtlvvykk
KNRykd+ + D++RVkL +++++ YI+Any+ +p ++
C55B7.3 80 EAGKNRYKDVGCLDNNRVKLEgpWPHEYIHANYVATP--------TN 118
pkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtklvEkgreeeKtCaqY
pk++I+TQ+Pl++T++DFW+M+++ kv++I ML++l Ekg K C +Y
C55B7.3 119 PKRFICTQAPLEKTCADFWYMCYQDKVEYIFMLCNLLEKGA--RK-CFEY 165
WPeeggeeggsltyG....ditVtlvseekk.....ddddytvRtleltn
+P+ ++g+ + + +++++i+V+++s +++ ++++++++t ++++++
C55B7.3 166 FPS---KKGDVMDFEeggqKISVKCESSVTYsfrsdAKANVTATEIVIEG 212
.gdeskneakqeklkgetrtVthyhytgWPDhgvPesgpkslldflrkvr
+g ++tr+ thyh+ +WPD+gvP+ +++l++l+ r
C55B7.3 213 pG-------------EKTRKTTHYHWNDWPDRGVPAA-DMAVLELLENAR 248
ksqsqenesgeaspdsgprSsctgPivVHCSAGiGRTGtfiaidillqql
s++ PivVHCSAGiGRTG ++ ++++++ql
C55B7.3 249 PSKG--------------------PIVVHCSAGIGRTGSVVMLEYIMDQL 278
eaegvvidifdivkelRsqRpgmVQteeQYiFiydaile<-*
a++ ++d ++i+ ++R+qR++++Qt++QY+F++++il+
C55B7.3 279 LAGQIIDDGEKILVKIREQRNNSIQTDAQYLFVHQVILN 317
CorA: domain 1 of 1, from 314 to 326: score 6.4, E = 0.57
*->vllsyfrrKgwlg<-*
v+l+yfr+K++++
C55B7.3 314 VILNYFRKKKLME 326