Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C55C3.4
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Query: C55C3.4 CE06991 tyrosine-protein kinase status:Partially_confirmed TR:Q18865 protein_id:AAA96169.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 203.0 4.6e-57 1
SH2 SH2 domain 49.8 5.4e-16 1
catalase Catalase 3.9 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SH2 1/1 11 87 .. 1 79 [] 49.8 5.4e-16
catalase 1/1 340 362 .. 261 283 .. 3.9 2.9
pkinase 1/1 121 376 .. 1 294 [] 203.0 4.6e-57
Alignments of top-scoring domains:
SH2: domain 1 of 1, from 11 to 87: score 49.8, E = 5.4e-16
*->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGd...YtLSVrdd
+yhG ++R++ +++L++ +G FL+R Se +G++++++LSV+ +
C55C3.4 11 YYHGLLPREDIQEMLNK----PGQFLLRTSEPVKGEkrqFVLSVVGE 53
gp.rVkHyrIqsldnggyyitggvkFssLpeLvehY<-*
+++ H+++++ d + +y+ F+++ eLv+hY
C55C3.4 54 KNtSANHFVVREADHK-VYVDK-IGFPTIIELVNHY 87
catalase: domain 1 of 1, from 340 to 362: score 3.9, E = 2.9
*->MteedakkydFnpfDlTKvWPee<-*
M+++ + + +F +f+lTK WPe+
C55C3.4 340 MPFSPEVNKEFAEFILTKCWPEK 362
pkinase: domain 1 of 1, from 121 to 376: score 203.0, E = 4.6e-57
*->yelleklGeGsfGkVykakhkd.....ktgkiVAvKilkk...ekes
el +klGeG+fG+V+k+k+++ + + +VAvK+ k+++ +ke+
C55C3.4 121 VELTKKLGEGAFGEVWKGKLLKildanHQPVLVAVKTAKLesmTKEQ 167
ikekrflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdy
ike + rE++++++L+H N+v+++gv ++ly++mE+++gG L +
C55C3.4 168 IKE--IMREARLMRNLDHINVVKFFGVAA-GTEPLYVIMELADGGALDSA 214
lrrnggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgt
l + +++ +++Q ++Gl+Y+H+++ +HRD++++N+L +
C55C3.4 215 LGKLH--FPMIKKYELIYQAANGLAYIHEKNLMHRDVAARNCLYGGG--Q 260
vKiaDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvWSlG
vKiaDFGL+r+ +++++ p ++++PE +++ y++k Dv ++G
C55C3.4 261 VKIADFGLSREGA-DYTMDLKKKVPIRWLPPET-IRSGLYTPKTDVFAFG 308
viLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridp
v+ +E+ g k+P+++ +
C55C3.4 309 VMAWEITEDG-------------------------KEPYPG-------FK 326
leelfriikrpglrlplpsncSee.lkdLlkkcLnkDPskRpGsatakei
e+ +++ g+r+p+ +++ +e + +l+kc+ ++R+ +k+i
C55C3.4 327 VIEVAMKVLQ-GYRMPFSPEVNKEfAEFILTKCWPEKYEDRL---PMKDI 372
lnhpwf<-*
+w+
C55C3.4 373 --CKWM 376