hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C56C10.8
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C56C10.8  CE02573   Transcription factor BTF3 (human) status:Confirmed SW:Q18885 protein_id:AAA68776.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
NAC      NAC domain                                     113.5      4e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NAC        1/1      41   100 ..     1    61 []   113.5    4e-30

Alignments of top-scoring domains:
NAC: domain 1 of 1, from 41 to 100: score 113.5, E = 4e-30
                   *->kddkKlqmklkKLgmkqieGveEVnifkedgEivihfnkpeVqkslg
                      +ddkKlq++lkKL +++i+G+eEVn++k+dg +vihfn+p+Vq+s++
    C56C10.8    41    ADDKKLQSNLKKLSVTNIPGIEEVNMIKDDG-TVIHFNNPKVQTSVP 86

                   anTyvvtGkakekd<-*
                   anT++vtG+a++k+
    C56C10.8    87 ANTFSVTGSADNKQ    100

[DB home][top]