hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C56G2.6
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Query:  C56G2.6  CE30639  locus:dhs-10  status:Confirmed SW:Q09517 protein_id:AAA64333.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
adh_short     short chain dehydrogenase                 113.0    6.4e-31   1
3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD bi     4.6        3.1   1
Lipoprotein_9 NLPA lipoprotein                            3.0        8.3   1
Saccharop_dh  Saccharopine dehydrogenase                  2.8        3.4   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
3HCDH_N         1/1      68    91 ..    24    47 ..     4.6      3.1
Saccharop_dh    1/1       5    94 ..     1    47 [.     2.8      3.4
Lipoprotein_9   1/1      85   103 ..   232   253 .]     3.0      8.3
adh_short       1/1      46   239 ..     1   197 [.   113.0  6.4e-31

Alignments of top-scoring domains:
3HCDH_N: domain 1 of 1, from 68 to 91: score 4.6, E = 3.1
                   *->AskGfpVvlkDinpkaLdkalkeI<-*
                      A+ Gf+V+l++++++ Ld  +keI
     C56G2.6    68    ARRGFNVLLVSRTQSKLDETKKEI    91

Saccharop_dh: domain 1 of 1, from 5 to 94: score 2.8, E = 3.4
                   *->VLvlGAGgVsqpvaeklarnsdvfs......................
                      + ++GAG+V+ +++ +  r  ++fs+  ++    ++ + +++ + +
     C56G2.6     5    CFLVGAGYVALAAVAY--RLLTIFSnilgpyvllspidlkkragasw 49

                   .......................eitvASrtkskadalaasiagk<-*
                      ++ +++ ++    +  +++ ++++ Srt+sk d+++++i +k
     C56G2.6    50 avvtgatdgigkayafelarrgfNVLLVSRTQSKLDETKKEILEK    94

Lipoprotein_9: domain 1 of 1, from 85 to 103: score 3.0, E = 8.3
                   *->eeVkkfiekkyPYykGaviPaw<-*
                      +e+kk+i +k  Y    ++  +
     C56G2.6    85    DETKKEILEK--Y-SSIEVRTA    103

adh_short: domain 1 of 1, from 46 to 239: score 113.0, E = 6.4e-31
                   *->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekaeqvaaelk
                         +a+vTGa+ GIG+a+A +La++G++V++v r+++k++++ +e+
     C56G2.6    46    GASWAVVTGATDGIGKAYAFELARRGFNVLLVSRTQSKLDETKKEIL 92

                   aelG.dralfiqlDvtdee.qvkaavaqaverlGd.rlDvLVNNAGilgd
                   + + + +++++++D t ++++   a++  ++ l    + vL+NN+G++ +
     C56G2.6    93 EKYSsIEVRTAAFDFTNAApS---AYKDLLATLNQvEIGVLINNVGMSYE 139

                   gppfe...elseedwervidvNltGvflltravlpamdhmlkrkgGrIvN
                    p+  ++ +   e    +  +N   + ll++  lp   +m +rk+G+IvN
     C56G2.6   140 YPDVLhkvDGGIERLANITTINTLPPTLLSAGILP---QMVARKAGVIVN 186

                   isSvaGlrvgvpglsaYsASKaavigltrsLAlElaphgtgIrVnavaPG
                   ++S aG +   + +++YsA+K  v  lt  L++E+   g  I+V  +aP
     C56G2.6   187 VGSSAGAN-QMALWAVYSATKKYVSWLTAILRKEYEHQG--ITVQTIAPM 233

                   gvdTdm<-*
                   +v+T m
     C56G2.6   234 MVATKM    239

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