hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D1014.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  D1014.1  CE07003   arylsulfatase status:Partially_confirmed TR:Q18924 protein_id:AAA96290.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
Sulfatase Sulfatase                                     404.3   5.3e-129   1
zf-XS     XS zinc finger domain                           6.2       0.66   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
zf-XS       1/1     326   337 ..     1    14 [.     6.2     0.66
Sulfatase   1/1      33   432 ..     1   545 []   404.3 5.3e-129

Alignments of top-scoring domains:
zf-XS: domain 1 of 1, from 326 to 337: score 6.2, E = 0.66
                   *->CPFCpNgkKKkDWY<-*
                        FCpNgk K DWY
     D1014.1   326    --FCPNGKPKSDWY    337

Sulfatase: domain 1 of 1, from 33 to 432: score 404.3, E = 5.3e-129
                   *->PNvllilaDDlGigdlgcyghptirTPnldrLAeeGlrFtnhytatp
                      PN++++++DDlG+gd+ +yghpt+++++ dr+A+eG+rFt++y+a++
     D1014.1    33    PNIVILMIDDLGYGDIASYGHPTQEYTQVDRMAAEGTRFTQAYSADS 79

                   lCsPSRAaLlTGryphrhGmvsngrlgvlgftaqsgglpldettLpelLk
                   +CsPSRA++ TGr+p+r G+v+ gr+++ +++    glp++ett++e+L+
     D1014.1    80 MCSPSRAGFITGRLPIRLGIVG-GRRVFVPYDIG--GLPKSETTMAEMLQ 126

                   eaGYaTglvGKWHlglnensdaagdgehlPlgwrGfdyfdgflygspfty
                   eaGYaTg+vGKWHlg+nen+  a+dg+hlP + rGf+y++   +++pft+
     D1014.1   127 EAGYATGMVGKWHLGINENN--ATDGAHLPSK-RGFEYVG---VNLPFTN 170

                   deencdngegteppeaypeqgalyvqplgfyltdlladkalgllkersaa
                     ++cd                                 ++++++
     D1014.1   171 -VWQCD--------------------------------TTREFYD----- 182

                   rsmaakalaadrPFflyisppaphfpfrnfkevaqpyrapqltqlfvdea
                                   + ++p  +f+++  ++v+qp++++++t+ +v ++
     D1014.1   183 ----------------KGPDPSLCFLYDGDDIVQQPMKFEHMTENLVGDW 216

                   adfiernkl...gekPfflylaflrlhvhtplfspaedleskdflgrsqr
                   ++f+++  +++++e+Pff y++f+  +vh  +f+      sk+f g+s+
     D1014.1   217 KRFLMTRLAqdqHERPFFFYFSFP--QVHSTQFA------SKRFRGSSKE 258

                   grYgdlveemDdlvGrvldaLedlGlldNTlvifTSDnGAhlegtpegsv
                   ++ +d ++  D+l G   d   +lG ++  +++++  +
     D1014.1   259 ALRSDGIDISDELRGESEDVEGSLG-KARPIIYYCNTHL----------- 296

                   NEmflNGLdldlGpsYnHYgewygggngplkggKgttslyeGGiRvPllv
                                         + + +g +k +++t++++     +P l
     D1014.1   297 ----------------------MAIRMGDYKVHYKTSPIFFNNSVDPNLD 324

                   rwPggikpaGrvsekselvshmDlaPTiLdLAGaplPkvanGakdrplDG
                   + +    p+G+ ++    ++++ ++P  +   ++p+ ++     d + D
     D1014.1   325 YFC----PNGKPKS---DWYVSQVCPDEHLQKHYPPLVF-----DLIRDP 362

                   vsllplllggkapsrrahetlfhyntcgrklravrwdrksgktpkwkahf
                   ++++pl +  k      +e  f++   +++l+++         + +k+
     D1014.1   363 YEQYPLQNTVKS-----QEIRFQA---MQRLSEHKS-------SLVKVKN 397

                   ftpafdddtnngwecvgtvsqaddiedckcegvetvthhdppelyDlsrD
                   +     ++ +++  c++       +++ckc++      +  p  +D sr
     D1014.1   398 VLG---SYNKTLIPCCN-------PPSCKCDK------LSRPTEFDESRP 431

                   P<-*
                   +
     D1014.1   432 D    432

[DB home][top]