Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1053.1
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Query: D1053.1 CE03099 glutathione S-transferase status:Predicted SW:Q18938 protein_id:CAA91449.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 81.7 2.7e-22 1
GST_C Glutathione S-transferase, C-terminal domain 23.6 2.2e-05 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 78 .. 1 88 [] 81.7 2.7e-22
GST_C 1/1 87 197 .. 1 121 [] 23.6 2.2e-05
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 78: score 81.7, E = 2.7e-22
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
++ l++++ s++++rvri+la k+v+ye++ vdl e+ +
D1053.1 3 NQKPVLYSYWRSSCSWRVRIALA-LKNVDYEYKTVDL-LSEEAK--- 44
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
++++++nP +vP++v++ g ++tES+AI++Yl++
D1053.1 45 SKLKEINPA----AKVPTFVVD---GQVITESLAIIEYLEE 78
GST_C: domain 1 of 1, from 87 to 197: score 23.6, E = 2.2e-05
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkperg.aekde
+kdp +r a ++ +++s++++l + +++ ++ k+e+g +++ +
D1053.1 87 PKDPIKR--AHARAISLLVASGIQPLHNLKVLQLLNKKEAGfGGQFA 131
eeveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwler
+ + + l ale Lk+h +ky+vGd +t+AD+ p+++ + r
D1053.1 132 ------KQFVVEGLTALEILLKQHSGKYAVGDDVTIADLSIPPLIYSANR 175
ldpdplfreeyPnLkawrkrvaarp<-*
+++d+ ++yP +++ +++a p
D1053.1 176 FNLDL---SPYPTVNRINETLADIP 197