Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1054.3
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Query: D1054.3 CE05522 status:Confirmed TR:Q18949 protein_id:CAA98442.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SGS SGS domain 192.7 5.8e-54 1
CS CS domain 34.0 8.5e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CS 1/1 3 88 .. 1 103 [] 34.0 8.5e-07
SGS 1/1 115 196 .. 1 91 [] 192.7 5.8e-54
Alignments of top-scoring domains:
CS: domain 1 of 1, from 3 to 88: score 34.0, E = 8.5e-07
*->skcRyDWyQTeseVvItvYaKnvlpenvniefssnDRktLsVsiqVF
sk+R+DW+Q+e+ V++t+ ++v+ + ++ +s n t+
D1054.3 3 SKPRHDWFQSETDVTLTILKRGVPLDDCSVSLSDNNTLTV------- 42
kheFGneefqlqlkLwgeIipiHiLHvqEkssvkvlstvKVEItLkK.ae
k +e + L+g + ++ +vk ++ KVE +L+K a
D1054.3 43 KQC---DEILFYGQLSGQVKK-------DDLTVKCTAA-KVEVRLPKfAR 81
pisWesL<-*
+ +W+sL
D1054.3 82 NERWASL 88
SGS: domain 1 of 1, from 115 to 196: score 192.7, E = 5.8e-54
*->kKnWDkLtavQKRlkevKkeEkiseDEkldGdaALnnlFkklYeDgD
kKnWD++++ +++keE+ DE+l+GdaA+n++F+k+Y+D++
D1054.3 115 KKNWDAIEK------QAVKEEE---DESLEGDAAVNKMFRKMYNDAS 152
demkRAMmKSftESnGTvLSTNWkDVgkkkVetkPPeGmEpKkw<-*
d+++RAMmKS++ESnGTvLSTNW+++g+kk+e++PP++mE+K++
D1054.3 153 DDVRRAMMKSYSESNGTVLSTNWSEIGQKKTECQPPACMEYKEY 196