Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1081.8
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Query: D1081.8 CE05540 MYB transforming protein status:Confirmed TR:Q21119 protein_id:CAB00038.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
myb_DNA-binding Myb-like DNA-binding domain 75.5 2.8e-19 2
BEX Brain expressed X-linked like family 6.3 0.55 1
vATP-synt_E ATP synthase (E/31 kDa) subunit 4.4 2.5 1
trp_syntA Tryptophan synthase alpha chain 3.8 3.6 1
Nin1_C 26S proteasome non-ATPase regulatory 2.8 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
myb_DNA-binding 1/2 8 54 .. 1 65 [] 44.2 1.3e-10
myb_DNA-binding 2/2 60 104 .. 1 65 [] 35.0 4.7e-08
vATP-synt_E 1/1 102 120 .. 1 19 [. 4.4 2.5
BEX 1/1 164 185 .. 79 100 .. 6.3 0.55
Nin1_C 1/1 300 306 .. 177 183 .] 2.8 6.1
trp_syntA 1/1 496 523 .. 236 265 .] 3.8 3.6
Alignments of top-scoring domains:
myb_DNA-binding: domain 1 of 2, from 8 to 54: score 44.2, E = 1.3e-10
*->rgrWteeEdellveavekhGkgfgIrlsltkanWkkIaekmgpgssn
+g+W Ede+l++a++k+Gk+ +W++Ia ++
D1081.8 8 GGVWKNTEDEILKAAIMKYGKN----------QWSRIASLLH----- 39
nvlgrtaeqcklryykyk<-*
+++a+qck r+ ++
D1081.8 40 ---RKSAKQCKARWFEWL 54
myb_DNA-binding: domain 2 of 2, from 60 to 104: score 35.0, E = 4.7e-08
*->rgrWteeEdellveavekhGkgfgIrlsltkanWkkIaekmgpgssn
+ +W+ eEde+l+++ ++ +++ W+ Ia +g
D1081.8 60 KTEWSREEDEKLLHLAKLMPTQ-----------WRTIAPIVG----- 90
nvlgrtaeqcklryykyk<-*
rt+ qc +ry ++
D1081.8 91 ----RTSAQCLERYEHLL 104
vATP-synt_E: domain 1 of 1, from 102 to 120: score 4.4, E = 2.5
*->fIrqEAeeKAeeIlaeAee<-*
+++EA++KAe +++eA+e
D1081.8 102 HLLDEAQRKAEGLDEEATE 120
BEX: domain 1 of 1, from 164 to 185: score 6.3, E = 0.55
*->qvreikrKlREqQlrhslRavs<-*
q++ krK RE+Ql+ +R s
D1081.8 164 QGKKAKRKARERQLSDARRLAS 185
Nin1_C: domain 1 of 1, from 300 to 306: score 2.8, E = 6.1
*->reLErIV<-*
reLE+IV
D1081.8 300 RELEQIV 306
trp_syntA: domain 1 of 1, from 496 to 523: score 3.8, E = 3.6
*->IeknaegeeqmleelyellslagkmKkatk<-*
Ie++ e++e+++++++e+ + +++mK ++
D1081.8 496 IEDASERAENKAKRNAEN-R-VRNMKMRSQ 523