Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1086.3
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Query: D1086.3 CE09061 status:Partially_confirmed TR:O17725 protein_id:CAB04018.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF19 Domain of unknown function DUF19 161.0 3.2e-54 1
AFP Insect antifreeze protein 7.7 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AFP 1/1 145 159 .. 1 12 [] 7.7 5.3
DUF19 1/1 35 185 .. 1 168 [. 161.0 3.2e-54
Alignments of top-scoring domains:
AFP: domain 1 of 1, from 145 to 159: score 7.7, E = 5.3
*->tCT...gStnCteAt<-*
tCT +gS++C +A+
D1086.3 145 TCTflkGSKDCIKAH 159
DUF19: domain 1 of 1, from 35 to 185: score 161.0, E = 3.2e-54
*->CTevtslkatkClyrlgdFlekvdfLDmsdkkelkkFkkSCdslasC
C+++tslk+tkC++r++++++++++L++s++k+l+k+k+SC+++++C
D1086.3 35 CGVITSLKTTKCVKRSDEVDKELKALVKSKDKDLSKVKASCKDTMEC 81
fetLeClpksedekkeavktikkyCdavqyfsddFvpCsdKLealkkkSe
+++L+C+p e+++ke+++ +C+ ++ f+d+F++Cs+KL+a
D1086.3 82 IKELKCKP-LEEDHKETLD----FCG-RALFQDEFKDCSKKLQA-----L 120
CfkdWDPfpnkihdekdkkKeeklkkeaCKnyFGKDNCMKKeItETCGee
+++d+D++++++++++++kK++k ++C++++G+++C+K++I+++CG++
D1086.3 121 KKSDKDAAKCLEDFKSETKKSTK---DTCTFLKGSKDCIKAHIKKECGDD 167
eWqgfrkhFiglasstilkqC<-*
++qg++k+++ +s+++++C
D1086.3 168 KLQGWQKFAQ---DSFKENEC 185