Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D1086.3
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Query:  D1086.3  CE09061    status:Partially_confirmed TR:O17725 protein_id:CAB04018.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF19    Domain of unknown function DUF19               161.0    3.2e-54   1
AFP      Insect antifreeze protein                        7.7        5.3   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
AFP        1/1     145   159 ..     1    12 []     7.7      5.3
DUF19      1/1      35   185 ..     1   168 [.   161.0  3.2e-54

Alignments of top-scoring domains:
AFP: domain 1 of 1, from 145 to 159: score 7.7, E = 5.3
                   *->tCT...gStnCteAt<-*
                      tCT  +gS++C +A+
     D1086.3   145    TCTflkGSKDCIKAH    159

DUF19: domain 1 of 1, from 35 to 185: score 161.0, E = 3.2e-54
                   *->CTevtslkatkClyrlgdFlekvdfLDmsdkkelkkFkkSCdslasC
                      C+++tslk+tkC++r++++++++++L++s++k+l+k+k+SC+++++C
     D1086.3    35    CGVITSLKTTKCVKRSDEVDKELKALVKSKDKDLSKVKASCKDTMEC 81

                   fetLeClpksedekkeavktikkyCdavqyfsddFvpCsdKLealkkkSe
                   +++L+C+p  e+++ke+++    +C+ ++ f+d+F++Cs+KL+a
     D1086.3    82 IKELKCKP-LEEDHKETLD----FCG-RALFQDEFKDCSKKLQA-----L 120

                   CfkdWDPfpnkihdekdkkKeeklkkeaCKnyFGKDNCMKKeItETCGee
                   +++d+D++++++++++++kK++k   ++C++++G+++C+K++I+++CG++
     D1086.3   121 KKSDKDAAKCLEDFKSETKKSTK---DTCTFLKGSKDCIKAHIKKECGDD 167

                   eWqgfrkhFiglasstilkqC<-*
                   ++qg++k+++   +s+++++C
     D1086.3   168 KLQGWQKFAQ---DSFKENEC    185



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