Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2013.5
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Query: D2013.5 CE00930 GTP-binding protein status:Partially_confirmed TR:Q18965 protein_id:CAA87771.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
dynamin Dynamin family 66.8 4.6e-16 1
ras Ras family 8.8 0.16 1
Adaptin_N Adaptin N terminal region 5.0 1.3 1
OTCace_N Aspartate/ornithine carbamoyltransferase, c 4.5 5.4 1
DUF135 Protein of unknown function DUF135 2.9 9 1
dynamin_2 Dynamin central region 2.8 6.8 1
Bcl-2 Apoptosis regulator proteins, Bcl-2 family 1.4 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Bcl-2 1/1 117 125 .. 100 108 .] 1.4 8.7
Adaptin_N 1/1 181 208 .. 1 32 [. 5.0 1.3
ras 1/1 289 304 .. 1 16 [. 8.8 0.16
dynamin 1/1 286 476 .. 24 213 .] 66.8 4.6e-16
DUF135 1/1 479 490 .. 367 378 .] 2.9 9
dynamin_2 1/1 481 501 .. 1 20 [. 2.8 6.8
OTCace_N 1/1 579 592 .. 1 14 [. 4.5 5.4
Alignments of top-scoring domains:
Bcl-2: domain 1 of 1, from 117 to 125: score 1.4, E = 8.7
*->eWiqenGGW<-*
eW +nG+W
D2013.5 117 EWFDSNGSW 125
Adaptin_N: domain 1 of 1, from 181 to 208: score 5.0, E = 1.3
*->ekkeitqelaeilnsfkddKkLdpykkkdavk<-*
++ i+ l+ +++s kd+ p++kkd+v+
D2013.5 181 KEPVILASLMSAFSSKKDE----PEEKKDNVS 208
ras: domain 1 of 1, from 289 to 304: score 8.8, E = 0.16
*->KlVliGDsGVGKSsLl<-*
+V++GD + GK+s l
D2013.5 289 RVVVVGDQSAGKTSVL 304
dynamin: domain 1 of 1, from 286 to 476: score 66.8, E = 4.6e-16
*->dLPqIAVvGgQSaGKSSVLEnlvGkdfLPRGsG.IVTRrPLvLkLik
+LP + VvG+QSaGK SVLE PRGsG+ TR P L +
D2013.5 286 NLPRVVVVGDQSAGKTSVLEMVAQARIFPRGSGeMMTRAPVKVTLSE 332
lvte.teyaeflhykgkeikfsdfseVrkeIedetdrVtGtnkgISpelI
++ ++++ + +k +d + r+e e +k +S+e I
D2013.5 333 GPYHvAQFRDSSREFDL-TKETDLQQLRNETEVRMRNSVRDGKTVSNEVI 381
nLrvySphVlnLTLIDLPGltkVavgdQPaDIeqqIkdlikkfIskeecl
+L v p+ + + L+DLPG+ d I + k + + +
D2013.5 382 SLTVKGPNLPRMVLVDLPGVISTVTADMARETKDDIIRMSKAHMENPNAI 431
iLaVvPaNvDlAtsdALklAkEVDPqGeRTiGvlTKlDLvDeGTd<-*
iL + vD s+ l +DP G+RTi vlTK D+ +
D2013.5 432 ILCIQDGSVDAERSNVTDLVSSIDPSGKRTILVLTKVDMAEKNLA 476
DUF135: domain 1 of 1, from 479 to 490: score 2.9, E = 9
*->drIrelLkGglw<-*
drI +L G+l+
D2013.5 479 DRIKKILEGKLF 490
dynamin_2: domain 1 of 1, from 481 to 501: score 2.8, E = 6.8
*->avDiLrNrViPLk.kGYmgVv<-*
+ +iL+++++P k +GY gVv
D2013.5 481 IKKILEGKLFPMKaLGYFGVV 501
OTCace_N: domain 1 of 1, from 579 to 592: score 4.5, E = 5.4
*->RHLLsikdlsreEl<-*
H+L+i +l+r+El
D2013.5 579 NHFLRIRQLNRDEL 592