Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D2013.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  D2013.7  CE00932   M0V-34 protein status:Confirmed TR:Q18967 protein_id:CAA87773.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
Mov34     Mov34/MPN/PAD-1 family                        129.0    8.6e-35   1
Rota_NS26 Rotavirus NS26                                  2.8        9.5   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Mov34       1/1       2   117 ..     1   120 []   129.0  8.6e-35
Rota_NS26   1/1     181   190 ..   214   223 .]     2.8      9.5

Alignments of top-scoring domains:
Mov34: domain 1 of 1, from 2 to 117: score 129.0, E = 8.6e-35
                   *->ssvrtvkihplvllkildhaerggps......keEvmGlLlGkvegd
                       s +tv++hp v+++++d ++r+++s+ +++++e +mG+L+G  e++
     D2013.7     2    ASNLTVNVHPGVYMNVVDTHMRRTKSsakntgQEKCMGTLMGYYEKG 48

                   grvievtnvFalpfeeteddvdaveldqeymekmlemlkkvngrgeevVG
                     +i+vtn+Fa+pf+e+ dd +++++  +   +m+  lkk++++ e++VG
     D2013.7    49 --SIQVTNCFAIPFNESNDDLEIDDQFNQ---QMISALKKTSPN-EQPVG 92

                   WYHSHPglgcwlSevDvhtqelyqryipe<-*
                   W+ +++++    +++++ ++++y r i e
     D2013.7    93 WFLTTSDI----TSSCLIYHDYYVRVITE    117

Rota_NS26: domain 1 of 1, from 181 to 190: score 2.8, E = 9.5
                   *->lVAiQLIEDl<-*
                      lVA+QLIE
     D2013.7   181    LVAMQLIEKA    190



[DB home][top]