Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2013.7
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Query: D2013.7 CE00932 M0V-34 protein status:Confirmed TR:Q18967 protein_id:CAA87773.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Mov34 Mov34/MPN/PAD-1 family 129.0 8.6e-35 1
Rota_NS26 Rotavirus NS26 2.8 9.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Mov34 1/1 2 117 .. 1 120 [] 129.0 8.6e-35
Rota_NS26 1/1 181 190 .. 214 223 .] 2.8 9.5
Alignments of top-scoring domains:
Mov34: domain 1 of 1, from 2 to 117: score 129.0, E = 8.6e-35
*->ssvrtvkihplvllkildhaerggps......keEvmGlLlGkvegd
s +tv++hp v+++++d ++r+++s+ +++++e +mG+L+G e++
D2013.7 2 ASNLTVNVHPGVYMNVVDTHMRRTKSsakntgQEKCMGTLMGYYEKG 48
grvievtnvFalpfeeteddvdaveldqeymekmlemlkkvngrgeevVG
+i+vtn+Fa+pf+e+ dd +++++ + +m+ lkk++++ e++VG
D2013.7 49 --SIQVTNCFAIPFNESNDDLEIDDQFNQ---QMISALKKTSPN-EQPVG 92
WYHSHPglgcwlSevDvhtqelyqryipe<-*
W+ +++++ +++++ ++++y r i e
D2013.7 93 WFLTTSDI----TSSCLIYHDYYVRVITE 117
Rota_NS26: domain 1 of 1, from 181 to 190: score 2.8, E = 9.5
*->lVAiQLIEDl<-*
lVA+QLIE
D2013.7 181 LVAMQLIEKA 190