Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D2023.6
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Query:  D2023.6  CE09076   Yeast ABC1 protein like status:Partially_confirmed TR:O17735 protein_id:CAB02876.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
ABC1     ABC1 family                                    200.2      7e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ABC1       1/1     142   259 ..     1   124 []   200.2    7e-59

Alignments of top-scoring domains:
ABC1: domain 1 of 1, from 142 to 259: score 200.2, E = 7e-59
                   *->eeLGapieeiFaeFdeePiAaASIAQVHrAvLkdsyGeeVAVKVQrP
                      +eL+a++ ++F+eF+e+P++aAS+AQVH+A+Lk s Ge+VAVKVQ+
     D2023.6   142    SELNAKVGDLFSEFSEKPVGAASLAQVHKAKLKES-GETVAVKVQHK 187

                   gvkkrirrDlkllkflakilkkfppggrRlrldldwivdEfrksLpqELD
                    v k++r D+++++fl+k+++ ++p++     +l+w+vdE++k+Lp ELD
     D2023.6   188 RVYKNSRTDVNTMEFLVKVADAVFPEF-----RLMWLVDEIKKNLPNELD 232

                   flrEAanaerfrenfaddpwvyVPkVy<-*
                   fl+EA+na++ +++f++++++++Pk+
     D2023.6   233 FLHEAKNADEAAQRFKHLKFLRIPKIK    259



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