Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2023.6
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Query: D2023.6 CE09076 Yeast ABC1 protein like status:Partially_confirmed TR:O17735 protein_id:CAB02876.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC1 ABC1 family 200.2 7e-59 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC1 1/1 142 259 .. 1 124 [] 200.2 7e-59
Alignments of top-scoring domains:
ABC1: domain 1 of 1, from 142 to 259: score 200.2, E = 7e-59
*->eeLGapieeiFaeFdeePiAaASIAQVHrAvLkdsyGeeVAVKVQrP
+eL+a++ ++F+eF+e+P++aAS+AQVH+A+Lk s Ge+VAVKVQ+
D2023.6 142 SELNAKVGDLFSEFSEKPVGAASLAQVHKAKLKES-GETVAVKVQHK 187
gvkkrirrDlkllkflakilkkfppggrRlrldldwivdEfrksLpqELD
v k++r D+++++fl+k+++ ++p++ +l+w+vdE++k+Lp ELD
D2023.6 188 RVYKNSRTDVNTMEFLVKVADAVFPEF-----RLMWLVDEIKKNLPNELD 232
flrEAanaerfrenfaddpwvyVPkVy<-*
fl+EA+na++ +++f++++++++Pk+
D2023.6 233 FLHEAKNADEAAQRFKHLKFLRIPKIK 259