Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2024.7
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Query: D2024.7 CE04296 status:Confirmed SW:Q18973 protein_id:AAA82289.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DSBA DSBA-like thioredoxin domain 273.8 2.2e-78 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSBA 1/1 6 211 .. 1 217 [] 273.8 2.2e-78
Alignments of top-scoring domains:
DSBA: domain 1 of 1, from 6 to 211: score 273.8, E = 2.2e-78
*->tvdeFFDfiCPyCylakerleklvaqykdlpdgvkvvlrpfplagak
+v +FFD+i+Py+y+++e ++++++++ + ++++pf++ag++
D2024.7 6 VVKFFFDVISPYSYFGFEGITRHRSVW----K-TPIQMKPFFFAGVV 47
kaigNvgpsnrdaqKyGlpvKlkymmadLerwAaryGiplrFpadFl.vf
++++N+g+++r +p+K kym++dL + A+++Gip+r+p+d+++++
D2024.7 48 RHTENPGLPLR------IPIKEKYMHKDLLFSAQYWGIPFRLPKDYTnMM 91
lgknstrAhrlalaagaegpelaekvvrelfealwsegaaitddselrev
l+++s +r++ a++ ++++l+e+v+r l+++++++g++i+++s+++ev
D2024.7 92 LNTSSIVPQRILVASQLRDNVLMEDVARGLWHRFYAYGKPIFTKSQVAEV 141
aekaGlkdaeeldefldspavkeavrentaaAislgvfGvPtfvvhvggk
++++++kd++el++++ds++vk+++rent++Ai g+fG+P+++++ +g+
D2024.7 142 LRDLHVKDVDELVMMSDSAEVKNILRENTDEAIGNGCFGAPWMHIT-DGH 190
yhvlvmvfGadrldtLadala<-*
++vl++vfG+drl+++ad la
D2024.7 191 GKVLQTVFGSDRLPQVADFLA 211