Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D2024.7
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Query:  D2024.7  CE04296    status:Confirmed SW:Q18973 protein_id:AAA82289.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DSBA     DSBA-like thioredoxin domain                   273.8    2.2e-78   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DSBA       1/1       6   211 ..     1   217 []   273.8  2.2e-78

Alignments of top-scoring domains:
DSBA: domain 1 of 1, from 6 to 211: score 273.8, E = 2.2e-78
                   *->tvdeFFDfiCPyCylakerleklvaqykdlpdgvkvvlrpfplagak
                      +v +FFD+i+Py+y+++e ++++++++    +   ++++pf++ag++
     D2024.7     6    VVKFFFDVISPYSYFGFEGITRHRSVW----K-TPIQMKPFFFAGVV 47

                   kaigNvgpsnrdaqKyGlpvKlkymmadLerwAaryGiplrFpadFl.vf
                   ++++N+g+++r      +p+K kym++dL + A+++Gip+r+p+d+++++
     D2024.7    48 RHTENPGLPLR------IPIKEKYMHKDLLFSAQYWGIPFRLPKDYTnMM 91

                   lgknstrAhrlalaagaegpelaekvvrelfealwsegaaitddselrev
                   l+++s   +r++ a++ ++++l+e+v+r l+++++++g++i+++s+++ev
     D2024.7    92 LNTSSIVPQRILVASQLRDNVLMEDVARGLWHRFYAYGKPIFTKSQVAEV 141

                   aekaGlkdaeeldefldspavkeavrentaaAislgvfGvPtfvvhvggk
                   ++++++kd++el++++ds++vk+++rent++Ai  g+fG+P+++++ +g+
     D2024.7   142 LRDLHVKDVDELVMMSDSAEVKNILRENTDEAIGNGCFGAPWMHIT-DGH 190

                   yhvlvmvfGadrldtLadala<-*
                   ++vl++vfG+drl+++ad la
     D2024.7   191 GKVLQTVFGSDRLPQVADFLA    211



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