Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2030.5
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Query: D2030.5 CE09082 B.subtilis YQJC protein like status:Confirmed TR:P90791 protein_id:CAA98118.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyoxalase Glyoxalase/Bleomycin resistance protein/Di 65.1 2.8e-17 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glyoxalase 1/1 41 162 .] 1 115 [. 65.1 2.8e-17
Alignments of top-scoring domains:
Glyoxalase: domain 1 of 1, from 41 to 162: score 65.1, E = 2.8e-17
*->rVgDleksldFYtdvLGfklvdredne..getglflglegdhgslvl
++ Dl+ks +FY LG k+++ +++++g + +f+ l+ + +
D2030.5 41 ATPDLKKSSEFYKG-LGAKVSEAVPQPehGVYTVFVELP----NSKI 82
eltpnpgpgs..........ghgfahiaftvdseDvdaayerlkakGvkv
el+++ g++s+ + ++++ +g++hi+++v D+++a ++k kG +
D2030.5 83 ELLHPFGEKSpiqaflnknkDGGMHHICIEVR--DIHEAVSAVKTKG--I 128
kflpgp....hpggggrsayfeDPdGnliElfed<-*
+ l++ ++ ++ g+++ +++++D +G+liEl ++
D2030.5 129 RTLGEKpkigAHGKEVMFLHPKDCGGVLIELEQE 162