Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2085.1
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Query: D2085.1 CE03105 glutamine-dependent carbamoyl-phosphate synthase, aspartate carbamoyltransferase, dihydroorotase status:Partially_con
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, 538.5 4.7e-158 2
CPSase_sm_chain Carbamoyl-phosphate synthase small ch 314.7 1.5e-95 1
GATase Glutamine amidotransferase class-I 243.3 3.4e-69 1
CPSase_L_chain Carbamoyl-phosphate synthase L chain, 240.3 2.7e-68 2
CPSase_L_D3 Carbamoyl-phosphate synthetase large 235.0 2.2e-89 1
OTCace_N Aspartate/ornithine carbamoyltransfer 208.4 1.1e-58 1
OTCace Aspartate/ornithine carbamoyltransfer 174.1 2.6e-50 1
MGS MGS-like domain 154.4 2e-42 1
Amidohydro_1 Amidohydrolase family 26.8 8.5e-07 1
HEAT_PBS PBS lyase HEAT-like repeat 8.8 1.9 1
Sua5_yciO_yrdC yrdC domain 8.5 0.37 1
Pox_A6 Poxvirus A6 protein 5.7 1.3 1
GARS_N Phosphoribosylglycinamide synthetase, 4.6 8.6 2
ldh lactate/malate dehydrogenase, NAD bin 4.6 6.9 1
GDI GDP dissociation inhibitor 2.9 5.9 1
HrcA HrcA protein C terminal domain 2.6 8.4 1
Amidohydro_2 Amidohydrolase family 2.0 9.9 1
SseC Secretion system effector C (SseC) li 2.0 5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CPSase_sm_chain 1/1 1 155 [. 1 163 [] 314.7 1.5e-95
GATase 1/1 182 359 .. 1 269 [] 243.3 3.4e-69
GARS_N 1/2 391 400 .. 1 10 [. 2.7 28
ldh 1/1 388 406 .. 1 18 [. 4.6 6.9
GDI 1/1 492 501 .. 1 12 [. 2.9 5.9
CPSase_L_chain 1/2 389 509 .. 1 129 [] 200.9 1.9e-56
GARS_N 2/2 528 536 .. 100 108 .] 1.1 75
HEAT_PBS 1/1 549 577 .. 1 27 [] 8.8 1.9
CPSase_L_D2 1/2 511 743 .. 1 262 [] 499.6 2.4e-146
HrcA 1/1 770 783 .. 1 14 [. 2.6 8.4
SseC 1/1 769 799 .. 451 491 .] 2.0 5
CPSase_L_D3 1/1 798 922 .. 1 128 [] 235.0 2.2e-89
CPSase_L_chain 2/2 933 1047 .. 1 129 [] 39.4 1.3e-09
CPSase_L_D2 2/2 1049 1137 .. 1 116 [. 38.8 5e-10
MGS 1/1 1325 1440 .. 1 134 [] 154.4 2e-42
Amidohydro_1 1/1 1476 1520 .. 1 78 [. 26.8 8.5e-07
Amidohydro_2 1/1 1665 1705 .. 1 47 [. 2.0 9.9
Sua5_yciO_yrdC 1/1 1803 1817 .. 1 16 [. 8.5 0.37
OTCace_N 1/1 1877 2021 .. 1 156 [] 208.4 1.1e-58
Pox_A6 1/1 2094 2111 .. 355 372 .] 5.7 1.3
OTCace 1/1 2024 2193 .. 1 182 [] 174.1 2.6e-50
Alignments of top-scoring domains:
CPSase_sm_chain: domain 1 of 1, from 1 to 155: score 314.7, E = 1.5e-95
*->kkAtLvLEDGtvfeGysFGAegsvaGEvVFnTGMtGYqEsLTDPSYk
+ AtL+LEDG+ f G +GA++sv+GE+VF+TGM+GY+EsLTDPSY+
D2085.1 1 MRATLHLEDGSTFVGSIYGATKSVVGEIVFQTGMVGYVESLTDPSYA 47
GQILvlTYPlIGNYGVnsreelDefgllredfESrdrihvaGlvvrelck
+Q+L+lTYPlIGNYGV+s+e+lD+f+l + fES dri+ a+l+v +c
D2085.1 48 KQLLTLTYPLIGNYGVPSAEILDQFKL-PAEFES-DRIWPAALIVEKICV 95
r..pSnWratkSLdeyLkeegCiPgifGIDTRaLTkkLRekGsmlGkIst
++++S+W+a++SL+e+L++ + +P+++GID R+L+kk+Re G+m++k+++
D2085.1 96 DgeHSHWQAVQSLSEWLRKAD-VPCLSGIDVRQLVKKIRETGTMKAKLVI 144
eeedpdpeellekikafp<-*
e +++++ ++++
D2085.1 145 ESDNAQN-------FDYV 155
GATase: domain 1 of 1, from 182 to 359: score 243.3, E = 3.4e-69
*->lliDngdSftynlvralrelGaelegvevtvvpndtsssdaeeietl
l++D+g + n++r+l+++G ++v+vvp+++ ++++
D2085.1 182 LAVDCG--LKNNQIRCLAKRG-----FRVKVVPWNH---PIDTE--- 215
eeieelllnpdgiiiSpGPGdPgaAmdeLnaggsieaikelrenplkiPi
++dg+++S+GPGdP + ++ + +++ + ++Pi
D2085.1 216 -------SDYDGLFLSNGPGDPEI------CAPLVDRLAKVIAR-GDKPI 251
LGICLGhQllalafGgnvglgAnStEFdpeTkwpglkvvpgkvrleasDe
+GICLGhQ+l a G+ k++
D2085.1 252 FGICLGHQILSRAIGA--------------------KTY----------- 270
nimekakkephhGknspvghdgcglpgtvslaplfyglpnpfivrryHsy
k+k ++++G+n+p+ h y +++++i++++H+y
D2085.1 271 ----KLK-YGNRGHNQPCTH---------------YATGRCYITSQNHGY 300
avdpeyiestlPegkglevtaasdddggesegeimairhkenHPfifGVQ
avdp+ +lP++ ++ ++++++d+ ++++i+h + P +f+VQ
D2085.1 301 AVDPD----SLPAD--WKALFTNENDK-----TNEGIVHSSK-P-FFSVQ 337
FHPEssltpgGpelLfnffikl<-*
FHPE + +p++ e+Lf+ f +
D2085.1 338 FHPEHTAGPTDCEFLFDVFADS 359
GARS_N: domain 1 of 2, from 391 to 400: score 2.7, E = 28
*->mkVLvIGsGG<-*
kVLv GsGG
D2085.1 391 RKVLVLGSGG 400
ldh: domain 1 of 1, from 388 to 406: score 4.6, E = 6.9
*->kkptKVaVvGAGG.gVGss<-*
k+++KV V+G GG +G++
D2085.1 388 KEQRKVLVLGSGGlTIGQA 406
GDI: domain 1 of 1, from 492 to 501: score 2.9, E = 5.9
*->MDEeYDVIVLGT<-*
E+YDV VLGT
D2085.1 492 --EQYDVQVLGT 501
CPSase_L_chain: domain 1 of 2, from 389 to 509: score 200.9, E = 1.9e-56
*->didkvLianrGeiaigqarefdysGYEtFderiqavaalseedLant
+ +kvL++++G++ igqa+efdysG qa +al+ee+ ++t
D2085.1 389 EQRKVLVLGSGGLTIGQAGEFDYSG-------AQALKALREEG-IRT 427
ilvnpadatvqtgpglADkvYflpktylnvdkIIeaarpdgvlathgGyG
+l+np++atvqt++g+AD +Yflp+t ++v+ +I+++rp+g+l t+gG++
D2085.1 428 VLINPNIATVQTSKGFADFTYFLPITKEYVTDVIKKERPTGILCTFGGQT 477
fLnenaeLaeagvleeygvkflGppaeaIram<-*
+Ln++++L + g++e+y+v++lG+ +++I+++
D2085.1 478 ALNCAIDLYKDGIFEQYDVQVLGTQINTIMKT 509
GARS_N: domain 2 of 2, from 528 to 536: score 1.1, E = 75
*->PskaAAqLE<-*
PskaA+ +E
D2085.1 528 PSKAATTME 536
HEAT_PBS: domain 1 of 1, from 549 to 577: score 8.8, E = 1.9
*->vRraAaraLgalgd..peAipaLleaLed<-*
v +Aa+aLg lg++ + + L++ ++
D2085.1 549 VLVRAAYALGGLGSgfADNREELIAIAQQ 577
CPSase_L_D2: domain 1 of 2, from 511 to 743: score 499.6, E = 2.4e-146
*->DKisfkaamkeagvptvPssagPrvDtvhvDktlvVpddlYkGlves
D+++f + +g++++Ps a+ +
D2085.1 511 DRDLFNQEISAIGEKVAPSKAA-----------------------TT 534
aeeAlaaAkeiGYPViIKAAfGgGGkGmriarneeelielfaqAlaeapa
+e A++aA+e+GYPV+++AA+++GG+G+++a+n+eeli++++qAla++
D2085.1 535 MEGAIEAAEELGYPVLVRAAYALGGLGSGFADNREELIAIAQQALAHS-- 582
AFGnpqvlvEKslkgpkhiEyqVlaDahGNcItlcnrECsdqrGiRtQks
+qvlv+Kslkg+k++Ey+V++Da++NcIt+cn+E++d++Gi+t++s
D2085.1 583 ----NQVLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENVDPLGIHTGES 628
IevAPsqtLtdeerqmlreaAvkiarhvGyvGaGTVeflldpdsgefyfI
++vAPsqtL+d+e+++lr++A+k++rh+G++G+++++++ldp+s +y+I
D2085.1 629 VVVAPSQTLSDREYNALRTCAIKVIRHLGIIGECNIQYALDPYSLTYYII 678
EvNpRLqVehpltekaTGypLakeqakIAlGipLpelkNivTggttAcFE
EvN+RL+++++l++kaTGypLa+++ak+AlG+ Lp ++N+vTg+ttAcFE
D2085.1 679 EVNARLSRSSALASKATGYPLAYVAAKLALGQHLPVIRNSVTGTTTACFE 728
PsLDYvVvKiprwdl<-*
PsLDY+VvKiprwdl
D2085.1 729 PSLDYCVVKIPRWDL 743
HrcA: domain 1 of 1, from 770 to 783: score 2.6, E = 8.4
*->lekllqkaasiLSe<-*
+e++lqka +++S+
D2085.1 770 FEEALQKALRMVSD 783
[output cut off at A = 10 top alignments]