Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D2085.4
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Query:  D2085.4  CE15744   similarity with a human hypothetical protein (PIR Acc. No. A38919) status:Partially_confirmed TR:O17736 protein_id:CA

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
HECT     HECT-domain (ubiquitin-transferase)            178.4    1.2e-49   1
IQ       IQ calmodulin-binding motif                     17.8     0.0041   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IQ         1/1      29    49 ..     1    21 []    17.8   0.0041
HECT       1/1     713  1001 .]    38   358 .]   178.4  1.2e-49

Alignments of top-scoring domains:
IQ: domain 1 of 1, from 29 to 49: score 17.8, E = 0.0041
                   *->rraaikIQaawRGylaRkryk<-*
                      ++aa k+Q++wRG++++ + +
     D2085.4    29    EKAARKVQKFWRGHRVQHNQR    49

HECT: domain 1 of 1, from 713 to 1001: score 178.4, E = 1.2e-49
                   *->LLFPEPLNPfkaneehleyfkfiGrvvGlallhnrLLDlfFarafyK
                      LL+P P  Pf+   + l+ f fiGr +G+ ++++ L +++Fa +f
     D2085.4   713    LLYPNPTAPFLLGVDCLAHFQFIGRMIGKLIYERQLQEVRFAEFFIA 759

                   klLrk.sikfvTTVPSDVEtsfhDlesvDpelYnsLiki..LeNtedKef
                    +   +++k       DV+  ++ + s+Dp   + L+ +++ +N e
     D2085.4   760 QIFETdKNK-------DVD--LQHMKSFDPIIFKHLKALqkMNNREL--- 797

                   EevinltdLtfsidleefgndekvSKEYVTVELiPnGrnivvTksNkkEY
                        ++ L+fs      g + +v        L+PnG++  vT +N++EY
     D2085.4   798 ----DELQLDFSVVTSDMGLVRNV-------NLKPNGSKFRVTVENVHEY 836

                   vhlviqwrlvkrieKQlkAFkeGFsevipeCnlikiFneeELelLigGvE
                   v l++++ l  ri   + A   G se+i+  +++ +F + EL+  i G
     D2085.4   837 VRLYVNYHLKQRIASMVDAVRKGISEIISI-EWMRMFAPHELQIMIAGY- 884

                   EegdiDvddLksnTeYedESSEGYsedsqvIqW...FWeiveefdkeeRa
                    e+ +  + L++  e +      + +  q I  ++ FW ++ +  + +++
     D2085.4   885 -EEVFTAKELRKFCELR------FAAGTQDINYeemFWDVIDKLSNDDKK 927

                   kLLQFvTGsprlPlqGFksLeGsngipkftiekagtederLPtAhTCfNr
                    LL+FvTG +r+P+ GFk     +  p+ +++    +d+ LPt+ TC N
     D2085.4   928 ALLKFVTGCSRAPVDGFK-----SIQPRMGVLVIPSSDDELPTSATCMNM 972

                   LdLPkYsSKeiLrsKLllAIeeCgeGFglv<-*
                   L +PkYs+ ++L++KL +AI++ g+GF l+
     D2085.4   973 LRIPKYSNRTKLEEKLRYAINS-GAGFELA    1001



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