Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2085.4
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Query: D2085.4 CE15744 similarity with a human hypothetical protein (PIR Acc. No. A38919) status:Partially_confirmed TR:O17736 protein_id:CA
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HECT HECT-domain (ubiquitin-transferase) 178.4 1.2e-49 1
IQ IQ calmodulin-binding motif 17.8 0.0041 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IQ 1/1 29 49 .. 1 21 [] 17.8 0.0041
HECT 1/1 713 1001 .] 38 358 .] 178.4 1.2e-49
Alignments of top-scoring domains:
IQ: domain 1 of 1, from 29 to 49: score 17.8, E = 0.0041
*->rraaikIQaawRGylaRkryk<-*
++aa k+Q++wRG++++ + +
D2085.4 29 EKAARKVQKFWRGHRVQHNQR 49
HECT: domain 1 of 1, from 713 to 1001: score 178.4, E = 1.2e-49
*->LLFPEPLNPfkaneehleyfkfiGrvvGlallhnrLLDlfFarafyK
LL+P P Pf+ + l+ f fiGr +G+ ++++ L +++Fa +f
D2085.4 713 LLYPNPTAPFLLGVDCLAHFQFIGRMIGKLIYERQLQEVRFAEFFIA 759
klLrk.sikfvTTVPSDVEtsfhDlesvDpelYnsLiki..LeNtedKef
+ +++k DV+ ++ + s+Dp + L+ +++ +N e
D2085.4 760 QIFETdKNK-------DVD--LQHMKSFDPIIFKHLKALqkMNNREL--- 797
EevinltdLtfsidleefgndekvSKEYVTVELiPnGrnivvTksNkkEY
++ L+fs g + +v L+PnG++ vT +N++EY
D2085.4 798 ----DELQLDFSVVTSDMGLVRNV-------NLKPNGSKFRVTVENVHEY 836
vhlviqwrlvkrieKQlkAFkeGFsevipeCnlikiFneeELelLigGvE
v l++++ l ri + A G se+i+ +++ +F + EL+ i G
D2085.4 837 VRLYVNYHLKQRIASMVDAVRKGISEIISI-EWMRMFAPHELQIMIAGY- 884
EegdiDvddLksnTeYedESSEGYsedsqvIqW...FWeiveefdkeeRa
e+ + + L++ e + + + q I ++ FW ++ + + +++
D2085.4 885 -EEVFTAKELRKFCELR------FAAGTQDINYeemFWDVIDKLSNDDKK 927
kLLQFvTGsprlPlqGFksLeGsngipkftiekagtederLPtAhTCfNr
LL+FvTG +r+P+ GFk + p+ +++ +d+ LPt+ TC N
D2085.4 928 ALLKFVTGCSRAPVDGFK-----SIQPRMGVLVIPSSDDELPTSATCMNM 972
LdLPkYsSKeiLrsKLllAIeeCgeGFglv<-*
L +PkYs+ ++L++KL +AI++ g+GF l+
D2085.4 973 LRIPKYSNRTKLEEKLRYAINS-GAGFELA 1001