hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D2089.4b
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Query:  D2089.4b  CE30509  locus:ptb-1  status:Partially_confirmed TR:Q8T3E6 protein_id:CAD30435.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
rrm        RNA recognition motif. (a.k.a. RRM, RBD, o    62.7    5.4e-17   3
mRNA_cap_C mRNA capping enzyme, C-terminal domain         3.0        7.8   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
mRNA_cap_C   1/1      68    88 ..   139   159 .]     3.0      7.8
rrm          1/3      74   139 ..     3    77 .]    13.6    0.015
rrm          2/3     261   328 ..     1    77 []    31.7  7.2e-08
rrm          3/3     378   446 ..     1    77 []    17.4   0.0012

Alignments of top-scoring domains:
mRNA_cap_C: domain 1 of 1, from 68 to 88: score 3.0, E = 7.8
                   *->sTaekVlesIedpVtkEeLle<-*
                      s+++ ++e+++ pV++++L +
    D2089.4b    68    SVLRTIIENMMFPVSLDVLYQ    88

rrm: domain 1 of 3, from 74 to 139: score 13.6, E = 0.015
                   *->VgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGfaF
                      + N  + v+ + L++lF  +G++  ++i++       +++++  +a
    D2089.4b    74    IENMMFPVSLDVLYQLFTRYGKV--LRIIT-------FNKNNTFQAL 111

                   VeFeseedAekAlealnGkelggrklrv<-*
                   V++ +  +A+ A++ l ++ +++  ++
    D2089.4b   112 VQMSEANSAQLAKQGLENQNVYNGCCTL    139

rrm: domain 2 of 3, from 261 to 328: score 31.7, E = 7.2e-08
                   *->lfVgNL.ppdvteedLkdlFskfGpivsikivkDhiekpketgkskG
                      + V+NL+   vt + L++lF+ +G+++++ki ++           k
    D2089.4b   261    ILVSNLhEMKVTTDALFTLFGVYGDVMRVKILYN----------KKD 297

                   faFVeFeseedAekAlealnGkelggrklrv<-*
                    a +++ ++ +A+ Al  l++ +  +r +rv
    D2089.4b   298 NALIQYSEPQQAQLALTHLDKVKWHDRLIRV    328

rrm: domain 3 of 3, from 378 to 446: score 17.4, E = 0.0012
                   *->lfVgNLppdvteedLkdlFskfGpi.vsikivkDhiekpketgkskG
                      l  +N+p++v+ee+Lk++F++ G   + +k ++          k
    D2089.4b   378    LHLSNIPTSVSEEKLKEMFAEAGFAvKAFKFFP----------KDHK 414

                   faFVeFeseedAekAlealnG.kelggrklrv<-*
                   +a ++ e+ e A +Al a++++k  ++  lrv
    D2089.4b   415 MALCQLEDIETAIDALIAMHNhKLAENAHLRV    446

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