Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2089.5
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Query: D2089.5 CE00940 locus:gbh-1 gamma-butyrobetaine,2-oxoglutarate dioxygenase status:Partially_confirmed SW:Q19000 protein_id:CAA85412.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gamma-BBH Gamma-butyrobetaine hydroxylase 738.1 3.9e-218 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Gamma-BBH 1/1 26 409 .. 1 444 [] 738.1 3.9e-218
Alignments of top-scoring domains:
Gamma-BBH: domain 1 of 1, from 26 to 409: score 738.1, E = 3.9e-218
*->slvivkwadgesltfpniWLRDnCpcseCynNVFLRDlshstkarkt
++v+vkw+dg++++fp iWLRD++p++++y+ +s++++ark
D2089.5 26 RIVNVKWSDGKTGVFPLIWLRDTSPDPSTYT------ISPAMTARK- 65
llidhldkiirvqqviidedgksLqIqWsDgNSTHeSeFpldwLkerdfs
l++ ++d+++++++++ided+++L+I+W++g + SeFp++wLk+r++s
D2089.5 66 LTMLEFDVEQNARKLWIDEDANCLKIEWESG---VLSEFPSEWLKIRNPS 112
yqarrrylrenyrppkqlWnkseledvlkdfsyedvNEFiDlksDsaLrq
+q++rr++r++y +p+q+W+k+e+e++lk+fs+e++ +k+++++++
D2089.5 113 DQEARRRRRKVYLFPEQTWGKAEIEGKLKKFSHEEF-----MKNEQVVHD 157
wLqaLakyGiaflkGaPddasNiKTQElSESNVGDgavekLakRiGfIrr
+Lqa++++Gia+lkGaP++++ gave++++RiG+I+r
D2089.5 158 FLQAVCIDGIAVLKGAPQGVR--------------GAVEAIGDRIGMIKR 193
TfyGelFeVsNadkpdaeNtAYtsNteLPlHTDlPyfeypPGlQiLHcLv
T++G +FeVs k+da+N+AY+sN++LP+HTD+P++++pP+lQ+LH+L+
D2089.5 194 THFGLVFEVS--LKADASNMAYASNGGLPFHTDFPSLSHPPQLQMLHMLQ 241
qsespDPNTGGenlfVDGFyVAekLReedPEaFeiLcsvpVdyryiggdg
++e+ GG++lfVDGF+VAe+LR+e+PE+F+iL++++++y+++g+d+
D2089.5 242 SAEE-----GGHSLFVDGFHVAEQLRVEKPEIFKILTTQSMEYIEEGYDV 286
dyyqsKp.lkefhviwrapvIeLDyseGrivrInfnppdRapFeyGiYDK
+++++K+ ++++++++r++vI+L+ ++G++++I+f++++R++F
D2089.5 287 HEINGKTiRFDYDMCARHKVIRLN-DDGKVNKIQFGNAMRSWF------- 328
PSDLNNNLDLNLiilnafdvpaaevkpFYrAyklFvslandpqnqfefKl
+d+++++v+++YrA+k+F++++++p+n+++f+l
D2089.5 329 -----------------YDCEPSKVQDVYRAMKTFTEYCYQPRNMLKFRL 361
epGdvvtFDNrRlLHgRtgyddasegqRhlvGcYvDwDifySRlRvLr<-
e+Gd+v+++N+RlLH+R+g+++a+e++R+l+GcY+DwDi++SR+R+Lr
D2089.5 362 EDGDTVLWANQRLLHTRDGFRNAPEKARTLTGCYFDWDIVKSRVRFLR 409
*
D2089.5 - -