Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2092.1a
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Query: D2092.1a CE09100 C2 domain-containing protein status:Partially_confirmed TR:P91199 protein_id:AAB42222.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
C2 C2 domain 213.6 3e-60 3
aa_permeases Amino acid permease 3.3 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
C2 1/3 59 140 .. 1 88 [] 90.2 1.4e-24
C2 2/3 228 303 .. 1 88 [] 46.3 6.7e-12
C2 3/3 447 527 .. 1 88 [] 79.9 1.3e-21
aa_permeases 1/1 639 660 .. 476 498 .] 3.3 4.3
Alignments of top-scoring domains:
C2: domain 1 of 3, from 59 to 140: score 90.2, E = 1.4e-24
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqkkkTkvikktl
++V+++ +++Lp kD ++g+sDPYVk+++ + + +k+ +i k+l
D2092.1a 59 MEVRLKNGEDLPVKD-ASGSSDPYVKFRYKDNIV---YKSGTIFKNL 101
NPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
NP W+E+F+ ++d++ +++++V+D+drf ddf+G ++
D2092.1a 102 NPSWDEEFQMI--VDDVTCPIRLEVFDFDRFCTDDFMGAAE 140
C2: domain 2 of 3, from 228 to 303: score 46.3, E = 6.7e-12
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqkkkTkvikktl
+++ ++e+k+ + D + +D+++k++lg+ k+kTkv+ +
D2092.1a 228 VNIVLVEGKGIRI-D--ERIPDAFCKFKLGQ----EKYKTKVCTGI- 266
NPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
+P+W E+F+++v + +q+ L+ + D+++ ++G+ s
D2092.1a 267 EPKWVEQFDLHVFDSADQM-LQMACIDRNTNA---IIGRLS 303
C2: domain 3 of 3, from 447 to 527: score 79.9, E = 1.3e-21
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqkkkTkvikktl
++ v A++L +kD ++gksDP+++++l + ++ +T +i ktl
D2092.1a 447 FNCLVFGAEDLVAKD-FGGKSDPFAVLELVN----TRVQTNTIYKTL 488
NPvWNEtFtFevpppdlqetLeitVyDydrfgrddflGevs<-*
+P WN +tF + d + +L++t+yD+d+ r +flG+v+
D2092.1a 489 SPSWNKIYTFA--VKDIHTCLQVTIYDEDPNNRFEFLGRVQ 527
aa_permeases: domain 1 of 1, from 639 to 660: score 3.3, E = 4.3
*->fvaaylaiplfiilwigykfikr<-*
++++y ipl i+ ++gy+fi
D2092.1a 639 YFQIYF-IPLMILALFGYNFILS 660