Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/DC2.3
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Query: DC2.3 CE20632 galactoside-binding lectin status:Partially_confirmed TR:Q9UAW1 protein_id:AAD14724.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gal-bind_lectin Galactoside-binding lectin 90.3 5.6e-25 1
Sybindin Sybindin-like family 76.9 2.5e-20 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Sybindin 1/1 3 106 .. 1 190 [. 76.9 2.5e-20
Gal-bind_lectin 1/1 153 300 .. 1 139 [] 90.3 5.6e-25
Alignments of top-scoring domains:
Sybindin: domain 1 of 1, from 3 to 106: score 76.9, E = 2.5e-20
*->iysLYIiNkaGgLiyykewnrpkkegEKTFeYPlDllLeeddkkvvV
iy++YI+++ G ++yy ew r+k++g
DC2.3 3 IYNVYIFDREGQCLYYDEWFRTKQSG--------------------- 28
vFgekDGIkvghvvvaVNGmtVnGtrlqdGkeVleyLdepdnYPVtvkFa
DC2.3 - -------------------------------------------------- -
rpklttNEkllLagmlHSlhaIssklSPvdakegklgvpilpGsSGievL
+ + +E++l++gm S+++++ +l d+ + ++
DC2.3 29 --LAPIQEYKLVFGMMLSMKSFVDRLATNDSNQT------------VNYY 64
EtdtFkLhclqTlTGiKFvlvTdpgtginrdsLlrkyYELYsD<-*
+t+ +k+ +l++ T iK+ l+Tdp + ++++ Ll+k+Y +++
DC2.3 65 KTSAYKMTFLESATSIKIMLNTDPNA-TGIRDLLHKIYQTWTE 106
Gal-bind_lectin: domain 1 of 1, from 153 to 300: score 90.3, E = 5.6e-25
*->pglvalnlglkpGktltVkGtVapk...nakrFavNl.......gkg
p ++ + +gl +G+ + V G V+p+ ++ krF+++l + +g
DC2.3 153 PFVSSIVGGLFAGRAIVVSGMVLPGfasDRKRFQIDLccgllidGDH 199
skEEndlvLHfNPRFneaH.......GDqntvVcNSkenGDNeWGtEqRe
+ ++ +LHfNPRF+ a ++ +++GD +v+ NS+ G WG+E+R
DC2.3 200 M---DNKALHFNPRFD-AKtgwfsgpGDDKLVI-NSFVSG--RWGNEER- 241
aafPFqaGqpFeisIsveedkfkVkvndghefeFphRlkleavqyLgikG
++PF+ G+pF i+I v e +fk+++ + h +FphR ++e++ ++i G
DC2.3 242 FDNPFKEGEPFQIRIMVFEKYFKISASGKHMCDFPHRVPVESIRTISING 291
Dikltsikf<-*
i++++++f
DC2.3 292 NIRVDYVEF 300