Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/E01G6.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  E01G6.1  CE03112   pancreatic trypsin inhibitor (kunitz) protein status:Partially_confirmed TR:Q19021 protein_id:CAA93531.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Kunitz_BPTI   Kunitz/Bovine pancreatic trypsin inhibi   203.2    4.3e-65   3
EB            EB module                                  62.7    3.4e-15   3
Chitin_bind_1 Chitin recognition protein                  5.6        3.8   1
Kelch         Kelch motif                                 4.9        9.6   1
WSC           WSC domain                                  4.7        9.5   1
Herpes_PAP    Herpesvirus polymerase accessory protei     1.4        6.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
EB              1/3     188   238 ..    26    63 .]    -8.7  3.8e+04
Kunitz_BPTI     1/3     255   309 ..     1    62 []    75.1  2.8e-23
Kunitz_BPTI     2/3     362   416 ..     1    62 []    79.7  8.5e-25
WSC             1/1     400   416 ..    24    40 ..     4.7      9.5
Herpes_PAP      1/1     432   441 ..   312   321 .]     1.4      6.3
Kunitz_BPTI     3/3     466   519 ..     1    62 []    64.8  6.3e-20
Kelch           1/1     881   908 ..    19    45 .]     4.9      9.6
Chitin_bind_1   1/1    1215  1231 ..     1    18 [.     5.6      3.8
EB              2/3    1189  1245 ..     1    63 []    78.3  1.6e-19
EB              3/3    1248  1260 ..    48    63 .]     6.7      4.4

Alignments of top-scoring domains:
EB: domain 1 of 3, from 188 to 238: score -8.7, E = 3.8e+04
                   *->gCeaseQCqggwpgSvCingmC..................eCpegvp
                      +C+a+  C++g    +C + +C +  +  + + + ++++  C e+
     E01G6.1   188    QCSATKPCPNG---FSCNDKKCcpyasacpagaplnngpmKCSEN-- 229

                   kttrvngvC<-*
                   +  ++++ C
     E01G6.1   230 APCPEGHSC    238

Kunitz_BPTI: domain 1 of 3, from 255 to 309: score 75.1, E = 2.8e-23
                   *->CslPpdtGptkcpCkggnfarywRwYYnpatgktTkCepFtYgGCgG
                      C++P+ +G +   C ++ +++  R+Y++  t +   C++F+++ CgG
     E01G6.1   255    CNMPRNSGVQ---CASS-MKSSNRYYFDIGTAT---CRSFKFTQCGG 294

                   NaNNFetleeCertC<-*
                   NaNNF +leeCe +C
     E01G6.1   295 NANNFGSLEECEGFC    309

Kunitz_BPTI: domain 2 of 3, from 362 to 416: score 79.7, E = 8.5e-25
                   *->CslPpdtGptkcpCkggnfarywRwYYnpatgktTkCepFtYgGCgG
                      C++ + +G    pC g++  ++ R+Y+np+t+k   C+pF+Y GC G
     E01G6.1   362    CNEMVSAGT---PCFGRG-LTIQRFYFNPSTQK---CQPFHYYGCSG 401

                   NaNNFetleeCertC<-*
                   N+NNFet ++C+++C
     E01G6.1   402 NGNNFETVDQCQNFC    416

WSC: domain 1 of 1, from 400 to 416: score 4.7, E = 9.5
                   *->vadsysfqsveaCqsaC<-*
                      ++++++f++v +Cq++C
     E01G6.1   400    SGNGNNFETVDQCQNFC    416

Herpes_PAP: domain 1 of 1, from 432 to 441: score 1.4, E = 6.3
                   *->nPNtKkQkCg<-*
                      nPN+  Q+C
     E01G6.1   432    NPNSELQRCS    441

Kunitz_BPTI: domain 3 of 3, from 466 to 519: score 64.8, E = 6.3e-20
                   *->CslPpdtGptkcpCkggnfarywRwYYnpatgktTkCepFtYgGCgG
                      C+  + +G+    Ckg  ++ + +w+Y+++++k   C +F+Y+GCgG
     E01G6.1   466    CNANMSRGN---GCKG--STQRSMWFYDKSKKK---CSQFVYNGCGG 504

                   NaNNFetleeCertC<-*
                     N+F t+ +C + C
     E01G6.1   505 TPNRFTTKVACTESC    519

Kelch: domain 1 of 1, from 881 to 908: score 4.9, E = 9.6
                   *->Gydg.qslnsvevYDpetntWeklpsmp<-*
                      G++ +q+l+ v + +p tn+ +++++m+
     E01G6.1   881    GVSQpQCLRGVAYVNPATNQRQFCSPMK    908

Chitin_bind_1: domain 1 of 1, from 1215 to 1231: score 5.6, E = 3.8
                   *->aqqCGrQaggalCpnnlC<-*
                       +qC + + + +C+n++C
     E01G6.1  1215    -EQCSSREANSTCDNGYC    1231

EB: domain 2 of 3, from 1189 to 1245: score 78.3, E = 1.6e-19
                   *->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
                      C++g+ +++g+C    l+  + G++gC+++eQC++ +++S+C+ng+C
     E01G6.1  1189    CPPGFFNMDGKC----LKILFAGQKGCISDEQCSSREANSTCDNGYC 1231

                   eCpegvpkttrvngvC<-*
                    Cp++  k   ++g+C
     E01G6.1  1232 ICPTD--KPLVHGGKC    1245

EB: domain 3 of 3, from 1248 to 1260: score 6.7, E = 4.4
                   *->eCpegvpkttrvngvC<-*
                      +Cpeg   + +  g+C
     E01G6.1  1248    TCPEG---FSNIAGRC    1260

	[output cut off at A = 10 top alignments]


[DB home][top]