hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/E02H1.4
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Query:  E02H1.4  CE01539  locus:pme-2 ADP-Ribosyltransferase status:Confirmed SW:Q09525 protein_id:CAA87379.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
PARP     Poly(ADP-ribose) polymerase catalytic domain   538.8   3.7e-158   1
PARP_reg Poly(ADP-ribose) polymerase, regulatory doma   266.1    4.6e-76   1
Leo1     Leo1-like protein                                3.7        3.2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PARP_reg   1/1     171   302 ..     1   139 []   266.1  4.6e-76
Leo1       1/1     456   477 ..   356   377 .]     3.7      3.2
PARP       1/1     304   532 ..     1   237 []   538.8 3.7e-158

Alignments of top-scoring domains:
PARP_reg: domain 1 of 1, from 171 to 302: score 266.1, E = 4.6e-76
                   *->kSKLdksvqdlIklifDvdSMaqtmmEfeiLsdmeKmPLGKlSkrqI
                      ++K++k +++++++++D++S+aq+++++eiLs++e++++GK+++r++
     E02H1.4   171    LLKQLK-FNEAFGRPIDCLSLAQLTTGYEILSKIEESIGGKSARRST 216

                   qsaYrVlkeiyevisdGgseakLiDlsNrFYTLIPHdFGfkkPpqFlidt
                   ++++rV++++++v+sdG+s   L+D+ N++Y+LIPH+FGf++Pp  +id+
     E02H1.4   217 RGRPRVADRVLAVKSDGPS---LHDI-NKYYSLIPHSFGFCVPP--KIDS 260

                   hekiqakrqMLDaLkGeIEvAysLlsledtasdkDPldrhYe<-*
                   h+kiqa+r++LDaLkG+IE++++L++l++tas+kD+++r+Ye
     E02H1.4   261 HAKIQAERELLDALKGSIEASLELKDLKKTASSKDIYQRLYE    302

Leo1: domain 1 of 1, from 456 to 477: score 3.7, E = 3.2
                   *->edegsdeEtrkekevkkegasr<-*
                      +++++de ++k+k+   ++a++
     E02H1.4   456    SEIDADEKMEKAKKTSVYAAGK    477

PARP: domain 1 of 1, from 304 to 532: score 538.8, E = 3.7e-158
                   *->LktkLepvdkdseGkiGEfsilrqYvkNthasthkaYdLkDPneiPt
                      L+++Lepv+++++GkiG+++++r++++++++s+++a++LkDPneiPt
     E02H1.4   304    LPCHLEPVSEEIAGKIGDCLAMRGPTHCYKLSLIDAFELKDPNEIPT 350

                   eavVevFrvsRkgEakrfKpfkklvPPPhnRrLLWHGSRlTNfaGILsqG
                   ea+Vev++v++k+++k++K+++++vPPP+++rLLWHG+R+TN+++IL++G
     E02H1.4   351 EAPVEVQEVPKKRGRKSTKTAAPTVPPPTTKRLLWHGTRVTNVFSILMNG 400

                   LriAPPeAPvTGYMFGkGvYFADmvSKSANYCctseasktGlmLLcEVaL
                   L++  P+++++G+MFG+GvYFA++++KSANYC ++eask+++mLLcEV++
     E02H1.4   401 LQF--PVGDRCGLMFGNGVYFANVPTKSANYC-CPEASKRVFMLLCEVET 447

                   GdPLvmyEleiakynikklpagKhSvkGaGKtaPdPtesvtlEDGVevPl
                   ++PLv+yE+ei+++ +k+++a+K+Sv++aGK++P++t  v++ +G+++++
     E02H1.4   448 ANPLVLYESEIDAD-EKMEKAKKTSVYAAGKHTPRDT--VEI-NGIPAFK 493

                   GnpietseektsLLYnEYIvYdveqvkikYvlrvkfnykt<-*
                   +n +et+ee+t+LLY+EY+++++e++kikYv++vk++++t
     E02H1.4   494 SN-LETIEEETRLLYDEYVMFNKEHFKIKYVVEVKVDRLT    532

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