hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/E02H1.7
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Query:  E02H1.7  CE30271  locus:nhr-19 Zinc finger, C4 type (two domains) status:Partially_confirmed SW:Q09528 protein_id:CAA87381.2

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
hormone_rec Ligand-binding domain of nuclear hormone    164.9    5.9e-50   1
zf-C4       Zinc finger, C4 type (two domains)          113.8    6.5e-33   1
integrin_B  Integrin, beta chain                          0.9        4.8   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
zf-C4         1/1      78   153 ..     1    77 []   113.8  6.5e-33
integrin_B    1/1     383   392 ..   431   441 .]     0.9      4.8
hormone_rec   1/1     266   474 ..     1   203 []   164.9  5.9e-50

Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 78 to 153: score 113.8, E = 6.5e-33
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRsiqknlviYsCkrnkdCv
                       +C++CG++++G+HYG+ +C GCK+FFrR++ + ++   Ckr+k C
     E02H1.7    78    GQCLICGEPSTGKHYGIVACLGCKTFFRRAVVQRQD-TECKREKPCD 123

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   ++   R++C++CR++KCLe GMskea +
     E02H1.7   124 VTTMARKACRACRYRKCLESGMSKEALQPR    153

integrin_B: domain 1 of 1, from 383 to 392: score 0.9, E = 4.8
                   *->evqvhfiCdvC<-*
                      ++ v f+C  C
     E02H1.7   383    KIIVLFNCG-C    392

hormone_rec: domain 1 of 1, from 266 to 474: score 164.9, E = 5.9e-50
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsyk
                        +ll++ ew+++lP F  L+++D+ ++Lk +++ +l+L+++y++ +
     E02H1.7   266    QSELLMMLEWTRTLPVFASLPVQDRSVILKRFAVHCLILEHGYYTAQ 312

                   ekkataDgsdtllfpdGtdidrdsl................gsselirri
                    +       d++l ++Gt+++r+ ++ +++ + + + +++    +l++++
     E02H1.7   313 ANI-----DDVWLITNGTCMPRNVEkleegckisvsadrrwRQEKLYKQM 357

                   felliklrvnvlaplieLkldeeEyalLkAIvLfnP...sdvpgLsesar
                    + +i+ +   + pl++Lkl++ E++ +k IvLfn++ +sd+ +++e++r
     E02H1.7   358 TDCCIDEV---ATPLRNLKLSPQEIVVIKIIVLFNCgcsSDYSEITEASR 404

                   elveklqekylsaLlqycllnypdslssdgpsRFakLLlllpvlrslssd
                   ++v   ++k++saL+ y++  +     ++ ++RF++L l+l+ + s++s
     E02H1.7   405 RIVLTFRNKVVSALFAYYESVGL----QNYAERFGNLVLMLSGVSSAASS 450

                   lkehlfflkrlfnlpkvppLlkell<-*
                   ++e  ++++rlf+++ ++pL +ell
     E02H1.7   451 MLE-AYQVMRLFKITPFDPLSQELL    474

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