Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/E04A4.4
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Query: E04A4.4 CE29748 status:Partially_confirmed TR:O44476 protein_id:AAB92042.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lactamase_B Metallo-beta-lactamase superfamily 46.5 1.7e-12 1
B56 Protein phosphatase 2A regulatory B subun 3.5 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
lactamase_B 1/1 509 724 .. 1 143 [] 46.5 1.7e-12
B56 1/1 795 814 .. 1 20 [. 3.5 2.9
Alignments of top-scoring domains:
lactamase_B: domain 1 of 1, from 509 to 724: score 46.5, E = 1.7e-12
*->gvnsyLvedptgggavLiDtGlgg.a.llllallkllldpddiddnl
+v+ yLve ++++a+LiD G +g+++++++ +++ + + n
E04A4.4 509 NVTGYLVEA-SENSAILIDVG-EGtYgQMRAVFGEDGCKQLLVNLN- 552
pelealirldkddddkdeedIaillTHaHlDHiGG...............
+l+THaH DH+ G ++ + +
E04A4.4 553 ---------------------CVLITHAHQDHMNGlytiiarrkeafesl 581
..................................................
+ ++ + + + + + ++ + ++ + ++ ++ ++++ ++
E04A4.4 582 gapyrplvlvcnrnvlkpmktysicfeniehlleivdisrypltppgspg 631
..................................................
++++ + + ++ ++ ++ + + ++ + ++++
E04A4.4 632 gppgkrprlpsphlppsrdvlqdmsssfdkkawkldelkavqvhhtrman 681
..........vlftGDllfs.gtgr.dl....liaestyslrklpggdae
+ + + + ++f+GD+++ + ++ + + l++est +
E04A4.4 682 gfvmrvagkrIVFSGDTKPCdLLVEeGKdadvLVHESTFED--------- 722
dlypslaelllesllklaalpdtvvpPgH<-*
gH
E04A4.4 723 ---------------------------GH 724
B56: domain 1 of 1, from 795 to 814: score 3.5, E = 2.9
*->pLPlfkDvpvsEreeLfiqK<-*
LP f++v v E eL i+K
E04A4.4 795 LLPIFREVFVAELFELTIKK 814