Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/EEED8.8
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Query: EEED8.8 CE27911 status:Partially_confirmed SW:Q09297 protein_id:AAC46768.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NUDIX NUDIX domain 68.0 1.1e-18 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NUDIX 1/1 114 256 .. 1 135 [] 68.0 1.1e-18
Alignments of top-scoring domains:
NUDIX: domain 1 of 1, from 114 to 256: score 68.0, E = 1.1e-18
*->rrravgvvllnedg...evLLvrrsrpppglWelPGGgvepGEtpee
+ a +v ++ d+++ e++ v+r+++ g W++PGG+v++GE + +
EEED8.8 114 NHAADPIVSRTNDNgdlEFVAVQRHDN--GEWAIPGGMVDAGEHVSQ 158
AAvREleEEtGlrvedlvvllvlllgvleypapgrd..........vvhv
+++RE+ EE+ ++d+++l++l+ + e ++ d+++++++ +++v
EEED8.8 159 TLRREFAEEAMHGIVDSENLDELWNNGKELYRGYVDdprntdnawmETVV 208
flaellgge.epqpdpg..EvaevrWvpleellelllageirevakvlrl
f ++ + g+ ++ + + +++ +++rW+ ++ +l ++++ ++ +
EEED8.8 209 FNFHDSKGLlKNVALQAgdDAKALRWIAVNSNEPLYASHS------HFID 252
llal<-*
ll++
EEED8.8 253 LLKE 256