Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01D4.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F01D4.4 CE09156 zinc carboxypeptidase status:Confirmed TR:O17754 protein_id:CAB02881.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Zn_carbOpept Zinc carboxypeptidase 175.1 1.1e-48 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Zn_carbOpept 1/1 38 245 .. 1 215 [] 175.1 1.1e-48
Alignments of top-scoring domains:
Zn_carbOpept: domain 1 of 1, from 38 to 245: score 175.1, E = 1.1e-48
*->ytYhnlqeilawLdsvaseypslvrkesiGkSyeGRelyvLkisadp
Yhn+ ++a+L + ++p+++ ++ iG+S+eGR+l v+ +s++p
F01D4.4 38 GHYHNQAQLEAKLGEINEKCPEITTLYEIGQSVEGRPLVVIQFSTTP 84
gehgpgkPeifldariHarEwvsselmlglleellseygsdar.iTkLrd
geh p kPe++l++++H++E +++el+l ++e l+++ +++++i++L++
F01D4.4 85 GEHIPTKPEVKLIGNMHGNEPIGRELLLRFAETLCNGAINNDKeIVQLLN 134
slrfyIvPvlNPDGgEYevtwgsdRmWRKtRsgragSscvGtDLNRNwpd
s+ ++I+P++NPDG +e + g+ R + gr+ + +G+DLNR +pd
F01D4.4 135 STSIHILPSMNPDG--FELALGTEPAQRQWLTGRS--NINGVDLNRDFPD 180
qWgceggasssPCSEtY................rgpaaesePEtkavkdf
++ + Y+ ++ + ++ ++ + + + ++ PEt av +
F01D4.4 181 LDSIF-----------YelqkigvpkfdhllslFEDNVDRQPETIAVGQW 219
irsrvlgekgqikvvlyidlHgySqlanlfPYGyt<-*
+ ++vl++++H ++++a ++P++
F01D4.4 220 T--------LSLPFVLSANFHEGDLVA-NYPFDAA 245