Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01E11.5
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Query: F01E11.5 CE30931 G-protein coupled receptor status:Partially_confirmed TN:AAA83574 protein_id:AAA83574.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_1 7 transmembrane receptor (rhodopsin family) 274.0 4.1e-88 1
LRR Leucine Rich Repeat 6.3 6.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRR 1/1 37 61 .. 1 25 [] 6.3 6.3
7tm_1 1/1 35 441 .. 1 275 [] 274.0 4.1e-88
Alignments of top-scoring domains:
LRR: domain 1 of 1, from 37 to 61: score 6.3, E = 6.3
*->nLreLdLsgN.nltgslppdafsgLt<-*
+L + L+ N++l+ ++p+ + ++L
F01E11.5 37 SLVFIVLYKNpRLQ-TVPNLLVGNLA 61
7tm_1: domain 1 of 1, from 35 to 441: score 274.0, E = 4.1e-88
*->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
N+LV +v++++ +l+t++n++++NLA++DL ++l ++p + +y++
F01E11.5 35 ANSLVFIVLYKNPRLQTVPNLLVGNLAFSDLALGLIVLPLSSVYAIA 81
gsedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrr
g +W+f++alC ++++ d+++++aSi++L +DRY+AI+ P+ y+++
F01E11.5 82 G--EWVFPDALCEVFVSADILCSTASIWNLSIVGLDRYWAITSPVAYMSK 129
rtsprrAkvvillvWvlalllslPpllfswvktveegngtln..vnvtvC
r+ +r A ++il vW+ ++l+sl pll+ w +t + +n ++++v++C
F01E11.5 130 RN-KRTAGIMILSVWISSALISLAPLLG-WKQTAQTPNLIYEknNTVRQC 177
lidfpeestasvstwlvsyvllstlvgFllPllvilvcYtrIlrtlrkra
++ +l sy+++s +++F++P l++ + Y+ I+ + k++
F01E11.5 178 TFL-----------DLPSYTVYSATGSFFIPTLLMFFVYFKIYQAFAKHR 216
rkgas.............................................
++ +++ +++ +++ +++ ++ ++ +++++ +++++++++++
F01E11.5 217 ARQIYrqklavsshvirkhiestilheishvlptsdefakeeeeeedses 266
..................................................
+++ +++ +++++ ++++ ++++++++++++++ ++ + + +++++ +
F01E11.5 267 sgqvenglgngndaiieedecededsdekrddhtsmttvtatvtgpteap 316
..................................................
+++ + +++ + ++++ ++++ ++ ++ + ++ +++++++++
F01E11.5 317 ymkreakisksvpiekesaiqkreakpmrsvmaisyekvkrhknrkeriy 366
.........kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.ls
+++ +++++++++ ker+ +k+l+++++ F++CW+P+f + +l +c+++
F01E11.5 367 rkslqrkpkAISAAKERRGVKVLGIILGCFTVCWAPFFTMYVLVQFCkDC 416
iimsstCelervlptallvtlwLayvNsclNPiIY<-*
+ ++ ++++wL+y+Ns++NPiIY
F01E11.5 417 SP----------NAHIEMFITWLGYSNSAMNPIIY 441