Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01F1.12a
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Query: F01F1.12a CE01225 Fructose-biphosphate aldolase status:Confirmed SW:P46563 protein_id:AAC46646.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
glycolytic_enzy Fructose-bisphosphate aldolase class- 863.6 6.5e-256 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
glycolytic_enzy 1/1 19 366 .] 1 351 [] 863.6 6.5e-256
Alignments of top-scoring domains:
glycolytic_enzy: domain 1 of 1, from 19 to 366: score 863.6, E = 6.5e-256
*->ELiktAkkivapGKGILAADEStgTigKRlasInvENteenRrayRe
EL+++A kiv++GKGILAADEStgTigKRl++In+EN+e+nR++yR+
F01F1.12a 19 ELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQ 65
LLftspgflgqyISGVILFEETLYQktddGkpfvdvLkekGivPGIKVDk
LLft+p+ l+q+ISGVIL+EET++Q+td+G++f+d+L+++GivPGIK+D
F01F1.12a 66 LLFTTPN-LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDL 114
GlvpLagtnkgEtttQGLDgLaeRcaqYykaGarFAKWRaVlkIgnnePS
G+vpLagt gE ttQGLD+LaeR+a+++k G+ FAKWR+Vl+Ig+++PS
F01F1.12a 115 GVVPLAGTI-GEGTTQGLDKLAERAAAFKKGGCGFAKWRCVLNIGTHTPS 163
elaIeenAngLARYAsIcQenGLVPIVEPEvLiDGeHdiarcakVTEkVl
+l++ enAn+LARYAsIcQ+nGLVPIVEPEvL+DGeHd+ar++kVTE+Vl
F01F1.12a 164 HLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVL 213
AaVykaLndhhVlLEGtLLKPNMVTPGsesakKvspeeiAeyTVtaLrRt
A+VykaL+dhhV+LEGtLLKPNMVTPG++sa+K+s+e+i+++TVtaLrR
F01F1.12a 214 AFVYKALADHHVYLEGTLLKPNMVTPGQSSASKASHEAIGLATVTALRRG 263
VPpAVpGvvFLSGGQSEeeAtlnLNAmNklplpkPWkLtFSYGRALQaSa
VP+AVpG++FLSGGQSE +At+nLNA+N+++l kPWkLtFSYGRALQaS+
F01F1.12a 264 VPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQASV 313
LkaWgGkkENveaAQealltRAkaNslAtlGKYkgggageeaAseSLfVk
LkaWgGk+EN++aAQ++ll+R+kaN++A+lGKY+g++a+++ A+eSLfV+
F01F1.12a 314 LKAWGGKDENIAAAQKTLLHRSKANGDASLGKYAGEDAAGA-AAESLFVA 362
gykY<-*
+++Y
F01F1.12a 363 KHSY 366