Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01F1.1a
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Query: F01F1.1a CE29249 status:Partially_confirmed TR:Q19094 protein_id:AAC46635.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SAC3_GANP SAC3/GANP family 359.0 4.9e-104 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SAC3_GANP 1/1 416 631 .. 1 268 [. 359.0 4.9e-104
Alignments of top-scoring domains:
SAC3_GANP: domain 1 of 1, from 416 to 631: score 359.0, E = 4.9e-104
*->eaPlPsevRPppVLkkTldYLvdkildrkddslreaYsFvcDRlRSi
+aP+PsevRP++VL+ +l++++dk+++r ++Ys++++++RSi
F01F1.1a 416 AAPNPSEVRPLEVLRLSLQNVRDKYRAR------AEYSYLTSQMRSI 456
RQDlTvQsirdsftVkvyEtiaRihleslhrLceepveqFDlkgdleeln
RQDlTvQ+ir++ftV+vyE++aRi+le ++d+ee+n
F01F1.1a 457 RQDLTVQVIRNEFTVEVYEINARISLE---------------NADREEFN 491
kSCLtqLkeLYeeDlessgiscaneleReaEFraYrvLynlfTkndpeil
k C++qLk LY+e +e +can +aEF+aYr+Ly+++++n+++i+
F01F1.1a 492 K-CQSQLKLLYSE-IE----NCAN----QAEFVAYRLLYYIAMDNQIDIN 531
alvlsLiDDlpsevredpaVklALqvraAfqsgNetvvssvnTEacsNLY
al+++ l++e++e+++V++AL+vr+A++ +N Y
F01F1.1a 532 ALLRE----LTPELKENDCVEFALNVRKAVTMNN---------------Y 562
vRFFkLyqSptaPylmgClldlfleriRkkALrimskaYrsahKqptiPl
v+FF+L + +aP+++++++dlf++r+RkkAL i++ka+r pti++
F01F1.1a 563 VKFFRLFK--NAPRMCPYIMDLFVDRERKKALGIITKAFR-----PTITY 605
dyleriLaFds.....glEeltefln<-*
+ ++++L++++++ ++lEe +++++
F01F1.1a 606 KLIAEFLSMKEstlidWLEEELKWTD 631