Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01F1.5
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Query: F01F1.5 CE01231 status:Partially_confirmed TR:Q19086 protein_id:AAC46639.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DLH Dienelactone hydrolase family 24.6 5.5e-06 1
Peptidase_S9 Prolyl oligopeptidase family 12.9 0.011 1
abhydrolase_2 Phospholipase/Carboxylesterase 7.0 0.74 1
Luteo_coat Luteovirus coat protein 6.7 1.3 1
Phosphodiest Type I phosphodiesterase / nucleotide p 3.2 4.8 1
DUF293 Domain of unknown function 2.2 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF293 1/1 258 267 .. 1 11 [. 2.2 9.7
Peptidase_S9 1/1 449 480 .. 50 81 .] 12.9 0.011
abhydrolase_2 1/1 546 589 .. 173 218 .. 7.0 0.74
Phosphodiest 1/1 583 598 .. 406 421 .] 3.2 4.8
DLH 1/1 537 604 .. 161 235 .. 24.6 5.5e-06
Luteo_coat 1/1 593 628 .. 98 139 .] 6.7 1.3
Alignments of top-scoring domains:
DUF293: domain 1 of 1, from 258 to 267: score 2.2, E = 9.7
*->lkmLTsvQREI<-*
k+L ++QREI
F01F1.5 258 -KNLNPIQREI 267
Peptidase_S9: domain 1 of 1, from 449 to 480: score 12.9, E = 0.011
*->nDfiaAAeylsklGYtspkriaifGgSnGGlL<-*
+D + A +l G ++ +++ i G S GG+L
F01F1.5 449 DDMLNGAKALVEQGKVDAEKVLITGSSSGGYL 480
abhydrolase_2: domain 1 of 1, from 546 to 589: score 7.0, E = 0.74
*->diPilliHGteDpvvPlalgkaakeyLkklgnpakvefkeypgmgH<
++Pi +HG eD vvP + +++ +e+++++g + + + g gH
F01F1.5 546 RTPIAFLHGREDTVVPMSQSITMYEKIRASGV--TTALMLFDGEGH 589
-*
F01F1.5 - -
Phosphodiest: domain 1 of 1, from 583 to 598: score 3.2, E = 4.8
*->ifigmGPsFknntvvp<-*
+f+g G+ F n+ v++
F01F1.5 583 LFDGEGHGFRNGQVIK 598
DLH: domain 1 of 1, from 537 to 604: score 24.6, E = 5.5e-06
*->ppleeapaikaPilahfGeeDpfipaeardqleealraanvdleihv
+p+ +++i++Pi +++G eD+ +p+ + + e++ra +v+ +
F01F1.5 537 SPIYHIDKIRTPIAFLHGREDTVVPMSQSITMYEKIRASGVTTALML 583
YpGAgHaFaadsresfeipGisYdaaAa<-*
++G gH+F + + + +++A+
F01F1.5 584 FDGEGHGFRNGQVI-------KESTEAT 604
Luteo_coat: domain 1 of 1, from 593 to 628: score 6.7, E = 1.3
*->nGqewhdsteDQFriLYKGnGsssdvAGsFrITirVqlqNPK<-*
nGq+ ++ste F++L K+ G I+ ++++ NPK
F01F1.5 593 NGQVIKESTEATFYFLMKAVGIEP------SISSKIEIVNPK 628