Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01F1.9
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Query: F01F1.9 CE01235 status:Partially_confirmed SW:Q19087 protein_id:AAC46643.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M18 Aminopeptidase I zinc metalloprotease ( 955.8 1.1e-283 1
sigma54_CBD Sigma-54 factor, core binding domain 4.0 6.6 1
Ribosomal_S6e Ribosomal protein S6e 3.3 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_S6e 1/1 129 153 .. 116 140 .] 3.3 8.3
sigma54_CBD 1/1 371 379 .. 196 204 .] 4.0 6.6
Peptidase_M18 1/1 22 459 .. 1 469 [] 955.8 1.1e-283
Alignments of top-scoring domains:
Ribosomal_S6e: domain 1 of 1, from 129 to 153: score 3.3, E = 8.3
*->daDlsvlnlkivkkGekdIpgLtdd<-*
d Dlsv l+ivk Gek L d+
F01F1.9 129 DRDLSVAGLVIVKNGEKLQHKLIDV 153
sigma54_CBD: domain 1 of 1, from 371 to 379: score 4.0, E = 6.6
*->RvlVNqrYf<-*
+v+VNqrY+
F01F1.9 371 KVNVNQRYA 379
Peptidase_M18: domain 1 of 1, from 22 to 459: score 955.8, E = 1.1e-283
*->FinkspTPyHvVaeiaerLlNkaGFkeLsEkenWqdkIGePggkYFv
++nk++TP+H+++e+++rLl +aGF+eL+E+++W+ I +P++kYFv
F01F1.9 22 YLNKAVTPFHATQEVKDRLL-QAGFTELPESGHWD--I-QPTSKYFV 64
trngsSiiAFaiggkwkpgnGfsiigAHTDSPrLrlKPkskkeTaegylq
t+n+s+i+AFa+gg++kpg+Gfsi+++HTDSP+Lr+KP+s+++ ++++lq
F01F1.9 65 TKNRSAILAFAVGGSYKPGSGFSIVVGHTDSPCLRVKPISHQK-SDKFLQ 113
vgvetYGGgIwkstWfDRDLsiaGrVfvKkaGkeekiiarlvniedPvlr
vgv+tYGGgIw +tWfDRDLs+aG+V+vK++ ek++++l+++++Pvl+
F01F1.9 114 VGVSTYGGGIW-RTWFDRDLSVAGLVIVKNG---EKLQHKLIDVKKPVLF 159
IPdLAIHLdrdiNesfkfneetelepiiglagddeeektpptsgeekftd
IP+LAIHL++d+ ++fk+n+etel+pi++++++++++ +p+++++++f+d
F01F1.9 160 IPNLAIHLETDR-TTFKPNTETELRPILETFAAAGIN-APQKPESTGFAD 207
fktIvnkHhpalLsliaeelGalieveDPkivsmeLilvDaqpakivGid
+++I+n+Hhp++L+lia+e+G +++eD iv+++L+l+D+++a+ivG++
F01F1.9 208 PRNITNNHHPQFLGLIAKEAG--CQPED--IVDLDLYLYDTNKAAIVGME 253
keFifApRLDNliccFtameaLldseedvnSldpedkvrivalfDnEEIG
+eFi+++RLDN+++++ta+++Ll+s+++ +S+++++++ri+a+fDnEE+G
F01F1.9 254 DEFISGARLDNQVGTYTAISGLLESLTG-ESFKNDPQIRIAACFDNEEVG 302
SlsaqGAdSnfLeeVLeRislaikkgrDqtkedfhlailkalaKSfliSA
S+sa+GA+S+f+e+VL+R+s+++ +++ +f++ai +KS+liSA
F01F1.9 303 SDSAMGASSSFTEFVLRRLSAGG-STT-----AFEEAI----GKSMLISA 342
DvaHAvHPNYsskHeenhaPelgkGvVikvnaNqRGKYATnsagaalvke
D+aHA+HPNYs+kHeenh+P++++GvV+kvn+NqR YAT+s+++a++k+
F01F1.9 343 DQAHATHPNYSAKHEENHRPAFHGGVVVKVNVNQR--YATTSTTHAALKQ 390
vAqqankrNVplQvfvvrndspcGsTIGPilaArtGirTiDlGppqLaMH
vA++a+ VplQv+vvrndspcGsT+GPila+++G++T+D+G+pqLaMH
F01F1.9 391 VAFEAQ---VPLQVVVVRNDSPCGSTVGPILATKLGLQTVDVGCPQLAMH 437
SiREttgsaDlyeavklfkaFF<-*
SiRE+++++++y+a++l+++F+
F01F1.9 438 SIREFADTSSIYQATTLYSTFY 459