hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F01G10.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F01G10.1  CE09163   transketolase status:Confirmed TR:O17759 protein_id:CAB02889.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
transketolase   Transketolase, thiamine diphosphate b   301.5    4.9e-92   1
transket_pyr    Transketolase, pyridine binding domai   184.1      1e-51   1
transketolase_C Transketolase, C-terminal domain        121.9    5.2e-34   1
E1_dehydrog     Dehydrogenase E1 component               12.3      0.017   1
zf-AN1          AN1-like Zinc finger                      4.6        7.1   1
Transaldolase   Transaldolase                             3.6        2.7   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
zf-AN1            1/1      69    83 ..    29    43 .]     4.6      7.1
E1_dehydrog       1/1     119   171 ..   110   176 ..    12.3    0.017
transketolase     1/1      10   273 ..     1   279 [.   301.5  4.9e-92
transket_pyr      1/1     312   477 ..     1   188 []   184.1    1e-51
Transaldolase     1/1     514   529 ..   147   163 ..     3.6      2.7
transketolase_C   1/1     488   610 ..     1   133 []   121.9  5.2e-34

Alignments of top-scoring domains:
zf-AN1: domain 1 of 1, from 69 to 83: score 4.6, E = 7.1
                   *->LpekHdCpgdykteg<-*
                      L + H Cp++y+ ++
    F01G10.1    69    LSKGHACPILYAAWE    83

E1_dehydrog: domain 1 of 1, from 119 to 171: score 12.3, E = 0.017
                   *->givgaqaqvpipaAvGiAlAakekreQfyvgdyrgkkevaitlfGDG
                      g +g +    +++A+G A+ +k          +++    +++l GDG
    F01G10.1   119    GSLGQG----LGVATGMAYVGK---------YIDKASYRVFCLLGDG 152

                   AFtnqGqffEalNfAalwkl<-*
                     +++G + Ea+ fA+++kl
    F01G10.1   153 E-SAEGSVWEAAAFASIYKL    171

transketolase: domain 1 of 1, from 10 to 273: score 301.5, E = 4.9e-92
                   *->idkraanaiRaLavDaVekAgSGHPGapMGmApiAeVLFkrtLrhnP
                         +aan+ R++++  + + +SGHP++  ++A+i+ +LF+  ++++
    F01G10.1    10    DLEDAANRMRISSIEMTCASKSGHPTSSTSAAEIMSTLFFSEMKYDV 56

                   ndPkWinRDRFVLSnGHasmLLYalLhLtGYkDLsmedLksFRnqlgSkT
                   + Pk +  DRFVLS+GHa+++LYa + ++G+  Ls e+ +s+R ++ S+
    F01G10.1    57 AEPKSASADRFVLSKGHACPILYAAWEEAGL--LSHEQVLSLR-KIDSDI 103

                   PGHPEightaGVEvTTGPLGQGIaNAVGmAiAernlAAtYNkpGfdivDh
                    GHP ++  +  +v+TG+LGQG++ A+GmA         Y +++ d++++
    F01G10.1   104 EGHPTPRLNFI-DVATGSLGQGLGVATGMA---------YVGKYIDKASY 143

                   ytYVflGDGCLmEGvSsEAsSLAGhlkLGnLIalYDdNqIsiDGetkisf
                   +++++lGDG+  EG+++EA+++A+++kL+nL+a+ D N+++++ +t++ +
    F01G10.1   144 RVFCLLGDGESAEGSVWEAAAFASIYKLDNLVAIVDVNRLGQSQATSLGH 193

                   teDvYakRfeAYGWHVieVeedGhDveaIaaAieeAKaekdkPTLIicrT
                   +  +Y++Rf+A+G ++i+V  +Gh+v ++ aA e+A+  k+kPT+Ii++T
    F01G10.1   194 DVETYKARFAAFGFNAIIV--NGHNVDELLAAYETARSTKGKPTAIIAKT 241

                   vIGyGsPnkqGthdvHGAPLGadEvaalkekL<-*
                    +G+G+ + ++   +HG+P ++  v a k ++
    F01G10.1   242 LKGKGIEGIENEDNWHGKPVPEGTVNAIKARF    273

transket_pyr: domain 1 of 1, from 312 to 477: score 184.1, E = 1e-51
                   *->kiatrkAfgeALaelaerdprVvglgaDvgaygGtftvtkglldpqg
                      k+atr+A+g ALa+l+++ prV+gl+ D +  ++tf++   +++p+
    F01G10.1   312    KVATRAAYGTALAKLGDASPRVIGLDGDTK--NSTFSDKLLKKHPD- 355

                   egRvidtgiaEqamvGfanGlAlaGpnllppveaqFgdFlnpAfdQirad
                     ++i++ iaEq+ vG+a+G+ ++ +  ++p+ ++F++F+       ra
    F01G10.1   356 --QFIECFIAEQNLVGVAVGAQCRDR--TIPFTSTFAAFFT------RAT 395

                   aairryralgklpvpfvvtrapiGvGedGptHhsqedeaflraiPgenNl
                   ++ir ++a + ++ + v  + +++ GedGp+++ +ed+a++r+iPg
    F01G10.1   396 DQIR-MAAVSFANLKCVGSHVGVSIGEDGPSQMALEDLAIFRTIPG---A 441

                   kVvrPsdpaeakglLraAirsdrddddPvvfreprqllrhk<-*
                   +V++P+d++ a+++ + A++    +++ v++r+ r +l+ +
    F01G10.1   442 TVFYPTDAVSAERATELAAN----TKGVVFIRTGRPALP-V    477

Transaldolase: domain 1 of 1, from 514 to 529: score 3.6, E = 2.7
                   *->lkAvkaLekehGInvNv<-*
                      lkA+++Leke GI+ +v
    F01G10.1   514    LKAAEELEKE-GIHATV    529

transketolase_C: domain 1 of 1, from 488 to 610: score 121.9, E = 5.2e-34
                   *->Gkaeil..reGkDvtivayGsmVheALeAAeeLakeelGIsaeViDl
                      G+a+++++   +++++v+ G++++e+L+AAeeL+ke  GI a+ViD+
    F01G10.1   488    GQAKVVkqSAQDKIVLVGSGVTLYESLKAAEELEKE--GIHATVIDP 532

                   RtvkPlDeetilesvkktgrlvvVeEaskpigGfGsevaaalaeyegfdy
                   +t+kPlD +ti e++ k g  vv++E++++ gG+G++v+aala+    ++
    F01G10.1   533 FTIKPLDGKTIAEHALKVGGRVVTTEDHYAAGGIGEAVSAALAD----YP 578

                   LdapvlrvggplapDtpiPhaspalelaylgltaaekI<-*
                        +r      + +++++++p+ + +++g++a ++I
    F01G10.1   579 --TIRVRSLN---VKEVPRSGPPDALVDMYGISA-RHI    610

[DB home][top]