Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01G4.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F01G4.3 CE20651 antiviral protein SKI2 like status:Partially_confirmed TR:Q19103 protein_id:CAA92767.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DEAD DEAD/DEAH box helicase 130.5 3.8e-39 1
helicase_C Helicase conserved C-terminal domain 48.1 3.5e-12 1
Pep_M4_propep Thermolysin metallopeptidase, propeptid 3.7 4.6 1
Init_tRNA_PT Initiator tRNA phosphoribosyl transfera 2.1 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Init_tRNA_PT 1/1 180 207 .. 1 31 [. 2.1 4.8
DEAD 1/1 277 466 .. 1 207 [] 130.5 3.8e-39
helicase_C 1/1 621 698 .. 1 72 [] 48.1 3.5e-12
Pep_M4_propep 1/1 945 954 .. 173 182 .] 3.7 4.6
Alignments of top-scoring domains:
Init_tRNA_PT: domain 1 of 1, from 180 to 207: score 2.1, E = 4.8
*->MdakseldivvteqsIyrslSkiakdikKen<-*
Md +++ld+v++ + I +a+ kK++
F01G4.3 180 MDMFDLLDMVTSNEYIIH---TVAAPVKKSE 207
DEAD: domain 1 of 1, from 277 to 466: score 130.5, E = 3.8e-39
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
++ ++++ p Q+ ++ + +g+ ++v+A+T +GKT++++ +i
F01G4.3 277 PTMARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIA 323
eallkgpqalvlaPTRELAnQiyeelkklgkgl.lrvalltggskkeqrr
+ ++++a++ +P ++L nQ+++++k+++ + +l+++ +
F01G4.3 324 LCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVgLVTG----------DI 363
klrkgpdilvaTPgrlldhlengkllekrlslknlkllVlDEADrmldmg
+l+ ++ l++T ++l ++l ng + ++l+++V+DE++ + ++
F01G4.3 364 QLHPEAACLIMTTEILRSMLYNG-----SEVIRDLEWVVFDEVHYINNE- 407
kahgFgpdleeilsrlpknrqtllfSATlpneverlaklflknpvevsvk
++g ++ee+l +lp+++ ++++SAT+pn ve++++ + + ++++v
F01G4.3 408 ---ERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKINVI 454
se.ptplrikqk<-*
s ++ p ++++
F01G4.3 455 STdRRPVPLEHF 466
helicase_C: domain 1 of 1, from 621 to 698: score 48.1, E = 3.5e-12
*->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
g+ a++h+g+ + +e ++ F++g +k+L+aT +a+G++ p+
F01G4.3 621 GF--AVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARC 665
lVInydl........pwnpesyiQRiGRaGRaG<-*
+V++ +++++++++ np +y Q++GRaGR G
F01G4.3 666 VVFDSIMkhdgterrMLNPGEYTQMAGRAGRRG 698
Pep_M4_propep: domain 1 of 1, from 945 to 954: score 3.7, E = 4.6
*->esGkvLnkwn<-*
+sG++L+++n
F01G4.3 945 QSGEILQEYN 954