Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01G4.6
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Query: F01G4.6 CE09162 phosphate carrier protein precursor status:Confirmed SW:P40614 protein_id:CAA97430.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
mito_carr Mitochondrial carrier protein 216.2 4.9e-61 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
mito_carr 1/3 42 132 .. 1 125 [] 98.0 1.9e-25
mito_carr 2/3 139 229 .. 1 125 [] 80.9 1e-20
mito_carr 3/3 240 324 .. 1 125 [] 46.4 2.6e-11
Alignments of top-scoring domains:
mito_carr: domain 1 of 3, from 42 to 132: score 98.0, E = 1.9e-25
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+++++l+G ++++i++t++ PlD+vK+R+Q+ ++
F01G4.6 42 YYAYCALGGVLSCGITHTAIVPLDLVKCRIQVNPE------------ 76
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
kY+gi +f+++++eEG++ +L kG++p+l
F01G4.6 77 ------------------KYTGIATGFRTTIAEEGAR---ALVKGWAPTL 105
lrvapygaaiyFgtYEqlKklllkkkge<-*
l+++ + + +Fg+YE +K+++ +++ge
F01G4.6 106 LGYSAQ-GLGKFGFYEIFKNVYADMLGE 132
mito_carr: domain 2 of 3, from 139 to 229: score 80.9, E = 1e-20
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
+ +l+a++ A ++a ++ +P++ K+R+Qt+++ +
F01G4.6 139 RTSLYLAASASAEFFADILLAPMEATKVRIQTSPGAP---------- 175
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
++++c+ i+k EGl g+YkGl p +
F01G4.6 176 --------------------PTLRGCAPMIYKAEGLT---GFYKGLPPLW 202
lrvapygaaiyFgtYEqlKklllkkkge<-*
+r++py ++++F+++E++ + l+ + +
F01G4.6 203 MRQIPY-TMMKFACFEKTVEALYQYVVP 229
mito_carr: domain 3 of 3, from 240 to 324: score 46.4, E = 2.6e-11
*->sflksllaGgiAGaiaatvtyPlDvvKtRLQtqgssslskssvnsdv
++++++aG iAG++ a+v++P D+v +L +++
F01G4.6 240 QLVVTFVAGYIAGVFCAIVSHPADTVVSKLNQDSQA----------- 275
gksksyrsakksnasasrkYkgildcfkkivkeEGliktrgLYkGlgpnl
++ i+k+ G + +g +kGl+p++
F01G4.6 276 -------------------------TAGGILKKLG-F--AGVWKGLVPRI 297
lrvapygaaiyFgtYEqlKklllkkkge<-*
+ ++ +a+++++Y+ +K l ++
F01G4.6 298 IMIGTL-TALQWFIYDSVKVALNLPRPP 324