Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F07A5.7
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Query: F07A5.7 CE09197 locus:unc-15 paramyosin status:Confirmed SW:P10567 protein_id:CAB01965.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Myosin_tail Myosin tail 1413.1 0 1
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domai 6.2 6.4 3
DUF260 Protein of unknown function DUF260 6.1 0.077 1
VacA2 Putative vacuolating cytotoxin 5.3 7.1 1
MbeD_MobD MbeD/MobD like 5.1 5.4 1
Cauli_DNA-bind Caulimovirus DNA-binding protein 3.6 5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MbeD_MobD 1/1 186 209 .. 54 77 .] 5.1 5.4
DUF260 1/1 254 284 .. 83 119 .] 6.1 0.077
Seryl_tRNA_N 1/3 337 355 .. 37 55 .] 2.8 54
Cauli_DNA-bind 1/1 346 371 .. 1 28 [. 3.6 5
Seryl_tRNA_N 2/3 509 524 .. 40 55 .] 6.6 5
VacA2 1/1 559 575 .. 47 63 .] 5.3 7.1
Seryl_tRNA_N 3/3 713 728 .. 40 55 .] 6.3 6
Myosin_tail 1/1 2 855 .. 1 864 [] 1413.1 0
Alignments of top-scoring domains:
MbeD_MobD: domain 1 of 1, from 186 to 209: score 5.1, E = 5.4
*->LseqVtgLSqQVqsLseqvrRLSr<-*
L +V +L + V++L++q +RL
F07A5.7 186 LANKVEDLNKHVNDLAQQRQRLQA 209
DUF260: domain 1 of 1, from 254 to 284: score 6.1, E = 0.077
*->ssLqqqieslqaeLalvkselstyrgdpqdqvpqesp<-*
s+Lq q+ ++q eL v++ l+++ ++ +
F07A5.7 254 SQLQSQLHQVQLELDSVRTALDEES------IARSDA 284
Seryl_tRNA_N: domain 1 of 3, from 337 to 355: score 2.8, E = 54
*->eilaLDkerRklqfeleeL<-*
+i +L+k+ lq+e+e L
F07A5.7 337 KISQLEKAKSRLQSEVEVL 355
Cauli_DNA-bind: domain 1 of 1, from 346 to 371: score 3.6, E = 5
*->LaailsEieevlsdqkkikaeIkaiLek<-*
+sE+e+++ d+ k ++ I a+Le+
F07A5.7 346 -SRLQSEVEVLIVDLEKAQNTI-ALLER 371
Seryl_tRNA_N: domain 2 of 3, from 509 to 524: score 6.6, E = 5
*->aLDkerRklqfeleeL<-*
++++ r++lqfe+++L
F07A5.7 509 EMEALRKNLQFEIDRL 524
VacA2: domain 1 of 1, from 559 to 575: score 5.3, E = 7.1
*->ninnAtinnskagtqsS<-*
n+n A+i+++k+ ++ S
F07A5.7 559 NLNRANIEAQKTIKKQS 575
Seryl_tRNA_N: domain 3 of 3, from 713 to 728: score 6.3, E = 6
*->aLDkerRklqfeleeL<-*
+L++++++lq++++e
F07A5.7 713 SLEEQVKQLQVQIQEA 728
Myosin_tail: domain 1 of 1, from 2 to 855: score 1413.1, E = 0
*->dlerqkreleeqlkrkeselsqlslklEdEqalvaqLqkkikeleaR
+ +r+++++l +++s ++ ++++ + ++va+L+ ++++le++
F07A5.7 2 ---SLYRSPSAALLKSPSQ-AAFGAPFGS--MSVADLG-SLTRLEDK 41
IeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEln
I++L+E+LE+ER++R+++E++RaDLs+++++L++RLe+a+G+T++QiE+n
F07A5.7 42 IRLLQEDLESERELRNRVERERADLSVQVIALTDRLEDAEGTTDSQIESN 91
kKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKqK
+KRE EL+KLR++LEE++l++E+a++ LRKKHqd++ +++dQieqLqK++
F07A5.7 92 RKREGELSKLRKLLEESQLESEDAMNVLRKKHQDSCLDYQDQIEQLQKKN 141
akaEKeKsqlqaEvddllaqldsitKaKlnaEKkakqlEsQlsElqvKld
ak+++e+++ q+Ev++l+a++d++ K+K+ aEK+a+++E+Q +El +K++
F07A5.7 142 AKIDRERQRVQHEVIELTATIDQLQKDKHTAEKAAERFEAQANELANKVE 191
ElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQLEe
+l++++nDl++q++RLq+EN+dL+++++++++q+++l+++K+ l++QLEe
F07A5.7 192 DLNKHVNDLAQQRQRLQAENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEE 241
AkRslEEEsReRanLqaqlrnlehDlDslrEqlEEEsEAKaeleRqLsKa
A+R+lE+++ReR++Lq+ql++++ +lDs+r++l+EEs A++++e++L a
F07A5.7 242 ARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLA 291
naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEeaaEaanaKcssL
n+ei+qw+sKf++E+al++EE+E+l+kK++qk++E+Ee++E++ +K+s+L
F07A5.7 292 NTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEYEEQIEIMLQKISQL 341
EKtKsRLqsElEDlqievEranaaaseLEKKqknFDKilaEwKkkvdelq
EK+KsRLqsE+E+l++++E+a+++++ LE++ +++++++ E+K ++de++
F07A5.7 342 EKAKSRLQSEVEVLIVDLEKAQNTIALLERAREQLERQVGELKVRIDEIT 391
aEletAqreaRnlstElfrlKneleElkDqvEaLrRENKnLqdEikDLtd
+Ele+Aqre+R++ +El+++K+++e++++q+EaL+RENK+L dE++++++
F07A5.7 392 VELEAAQRELRAVNAELQKMKHLYEKAVEQKEALARENKKLHDELHEAKE 441
qLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeqeEsKvlRaqvE
+L++++R++HEL+++++rL+ E++ELq+AL+EA a ++++E++++Ra +E
F07A5.7 442 ALADANRKLHELDLENARLAGEIRELQTALKEADAQRRDAENRAQRALAE 491
lsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaEaEaKgKaEalR
l+++R+E+ERRL+EKEEE+E++RKn+q++i++L a+La+aEa++K+E++R
F07A5.7 492 LQALRIEMERRLQEKEEEMEALRKNLQFEIDRLIAALADAEARMKSEISR 541
lKKKLEgdInELEiaLDhaNkanaeaqKnvKkyqqqvkeLQtqvEeeQRa
lKKK++++I+ELE+++D+ N+an+eaqK++Kk+++q+k+LQ+++E++QR+
F07A5.7 542 LKKKYQAEIAELEMTVDNLNRANIEAQKTIKKQSEQLKILQASLEDTQRQ 591
redareqlavaERRataLqaElEELrvaLeqaeRaRKqAEtElaEaserv
+++ ++q+a a+R+++aL+aElEE+++aL++a+RaRKqAE +l+Ea++r+
F07A5.7 592 LQQVLDQYALAQRKVAALSAELEECKTALDNAIRARKQAEVDLEEANGRI 641
neLtaqnssLiaqKRKLEgelaalqsDLDEavnElkaAeERakkaqaDaa
++L + n++L+++K+KLE+el++ q+DLDE+++El+aA+ERa++a aDaa
F07A5.7 642 SDLISINNNLTSIKNKLETELSTAQADLDEVTKELHAADERANRALADAA 691
rLaeELrqEQehsqklErlRKqLEsqvKeLqvRLdEaEaaAlkgGKkvIq
r +e+L++EQehs+k+++lRK+LE+qvK+Lqv+ +EaEaaAl gGK+vI+
F07A5.7 692 RAVEQLHEEQEHSMKIDALRKSLEEQVKQLQVQIQEAEAAALLGGKRVIA 741
KLEaRVReLEaELdgEqRRhaetqKnlRKaeRrvKELqfQvEEDkKnler
KLE+R+R+LE++Ld+E+RRh+etq +lRK++Rr+KE+q+ v+E++Kn+++
F07A5.7 742 KLETRIRDLETALDEETRRHKETQNALRKKDRRIKEVQQLVDEEHKNFVM 791
lQDLvDKLqaKiKtyKRQlEEaEEiaqinlsKyRkaQreLEdAEERADqA
+QD+ D+L++K++++KRQl E E+++++nl+++R++Q+eLEdAE+RADqA
F07A5.7 792 AQDTADRLTEKLNIQKRQLAESESVTMQNLQRVRRYQHELEDAEGRADQA 841
EsslnklRqreaKsRrs<-*
Essl+++R aK+R+s
F07A5.7 842 ESSLHLIR---AKHRSS 855