Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F07H5.2
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Query: F07H5.2 CE05569 locus:sgn-1 gamma-sarcoglycan status:Partially_confirmed TR:Q19185 protein_id:CAA92663.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sarcoglycan Sarcoglycan complex subunit protein 533.9 7.5e-158 1
NIF NLI interacting factor 4.6 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NIF 1/1 56 84 .. 19 58 .. 4.6 3
sarcoglycan 1/1 70 326 .. 1 288 [] 533.9 7.5e-158
Alignments of top-scoring domains:
NIF: domain 1 of 1, from 56 to 84: score 4.6, E = 3
*->TLiHSyiDhhdtvtrsstkpisnpDfivhveidg.ghphqv<-*
T+iHS +tkp+ +D i++v i+g + + ++
F07H5.2 56 TVIHS-----------TTKPVADAD-IYRVGIYGwRKRFLY 84
sarcoglycan: domain 1 of 1, from 70 to 326: score 533.9, E = 7.5e-158
*->iykvGiyGWRkrcLYtfvLLLliLiVvNLlLTLwIlkVlrfspdGmG
iy+vGiyGWRkr+LYtf+L+L+i+iV+NL+LT+wI++Vl+fspdG+G
F07H5.2 70 IYRVGIYGWRKRFLYTFILILAIGIVLNLSLTFWIMSVLDFSPDGIG 116
sLkItedGLlrleGesdleflqplyasqIrsrsdepLtieSDAGDGESnr
+LkI++dG+ r+eG+++ f++p+++sq++++++e+Lt++ S+r
F07H5.2 117 TLKIEDDGI-RVEGRAQ--FDRPVHFSQLSTLDEETLTVD-------SFR 156
nVtVnaRnpnGavserlqlGpe.kvevlsrerfevnstngklLFsaddde
+V+++aR+pnG+v+++++l+pe+k+++ +++rfev+++++klLF+ad+de
F07H5.2 157 GVNLQARKPNGDVASKFSLMPEgKAQM-TCDRFEVFDEDQKLLFFADSDE 205
vvfgteYErhrLripGgvgalfeksvsTprVradpdsdLrLESPTRslsv
+++++e +Lri++++g++fe++++T++Vr++pds+LrLESPTRs+sv
F07H5.2 206 IGLKLE----NLRILEDGGSVFEGAIQTSSVRPQPDSPLRLESPTRSVSV 251
rAaeGVeikaaAgemeavsleDielkSkqGeirLeastvfismtrLprss
+Aa+++ei+aaAge++++sl+Di+++SkqGeirLe+s+ i+m++L+rs+
F07H5.2 252 DAAQDIEILAAAGEVSVNSLLDISISSKQGEIRLESSS--IYMEKLARSD 299
sgplGsrqqsgsgdWvqykiCvCaPnGtLFlvsvAgpnsgCq<-*
+ +Gs +q+++CvC+ nG+LFl A+pn++C+
F07H5.2 300 G--RGS---------PQTQVCVCH-NGRLFL---AAPNADCR 326