Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F08A8.4
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Query: F08A8.4 CE17636 ACYL-COENZYME A OXIDASE, PEROXISOMAL (EC 1.3.3.6) (PALMITOYL-COA OXIDASE) (AOX) status:Partially_confirmed TR:O62139
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ACOX Acyl-CoA oxidase 232.0 8.5e-66 1
Acyl-CoA_dh Acyl-CoA dehydrogenase, C-terminal domain 31.0 2.7e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Acyl-CoA_dh 1/1 294 448 .. 16 162 .] 31.0 2.7e-07
ACOX 1/1 527 660 .. 1 143 [] 232.0 8.5e-66
Alignments of top-scoring domains:
Acyl-CoA_dh: domain 1 of 1, from 294 to 448: score 31.0, E = 2.7e-07
*->RlgiAaqalGiArrAleeAveYAkeRkqFG......akpIadfQlvq
R ++A + ++ Al Av+Y+ R+q+ ++++++ ++ d+Q q
F08A8.4 294 RSHMATGQGALLAQALIIAVRYSAVRRQGFlenktqEVKVLDYQTQQ 340
fkLAdmateleaaRllvyrAAwl..DqGkd...........arleaamAK
++L ++++++a +++ +l ++ kd + +++++ ++ ++++ K
F08A8.4 341 HRLFPSLARAYAFIFTGFETIHLysQLLKDvdmgntsgmadLHALTSGLK 390
lfateaAvevadeAvQihGGyGytkegpnarerdavSypveRlyRDaril
+t e +++A+ +GG+Gy++ + +y a +
F08A8.4 391 SVVTHQTGEGIEQARMACGGHGYSMA-----------SYISEIYGIAIGG 429
rIyEGTsEIqrliIaRall<-*
+yEG + +++l +aR l
F08A8.4 430 CTYEGENMVMLLQLARYLV 448
ACOX: domain 1 of 1, from 527 to 660: score 232.0, E = 8.5e-66
*->askaHtrlylvkaFyerinerdaIadePavkpvLqnLanLYalwsle
as++Htrl++++aF++r++ I+d +vk+vL++L++L+++++l+
F08A8.4 527 ASRLHTRLFIIEAFMRRVSR---IEDI-PVKEVLTDLLHLHVNYELL 569
ehsGdFLreGylspeqidevtseqllkLcaevRpnAVgLtDaFdlsDffL
+++++ L+ ++s++q d+++ +ql+ ++ ++Rp AV+L+D+F++sD+ L
F08A8.4 570 DVATYALE--FMSSTQLDYIR-DQLYLYLEKIRPSAVSLVDSFQISDMQL 616
nSviGryDGdVYenlFeevkqqnPlnntrevkPsYekaLkpmlnra<-*
+Sv+Gr+DG+VYenlF+++k +Pln++ +v+Ps+ k+L pm+++a
F08A8.4 617 RSVLGRRDGNVYENLFKWAK-SSPLNKS-DVLPSVDKYLMPMMEKA 660