Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F08G12.2
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Query: F08G12.2 CE18578 WD domain, G-beta repeat (6 domains) status:Partially_confirmed TR:Q19211 protein_id:CAA91460.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 188.5 1.1e-52 7
GlutR_N Glutamyl-tRNAGlu reductase, N-terminal do 4.6 4.2 1
Lipase_GDSL GDSL-like Lipase/Acylhydrolase 1.8 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/7 28 66 .. 1 39 [] 32.4 2.1e-07
WD40 2/7 71 109 .. 1 39 [] 36.6 1.3e-08
GlutR_N 1/1 114 124 .. 144 154 .] 4.6 4.2
Lipase_GDSL 1/1 97 143 .. 318 361 .] 1.8 9.1
WD40 3/7 113 152 .. 1 39 [] 30.7 6.1e-07
WD40 4/7 156 193 .. 1 39 [] 18.2 0.0022
WD40 5/7 197 235 .. 1 39 [] 43.6 1.4e-10
WD40 6/7 263 285 .. 16 39 .] 12.2 0.12
WD40 7/7 289 327 .. 1 39 [] 25.3 2.1e-05
Alignments of top-scoring domains:
WD40: domain 1 of 7, from 28 to 66: score 32.4, E = 2.1e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ +l gH++ ++ afspd g++la+++ D +i W+
F08G12.2 28 MAPTMVLlGHEGEIYTGAFSPD-GTCLATSGYDQKIFFWN 66
WD40: domain 2 of 7, from 71 to 109: score 36.6, E = 1.3e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+e +t++gH+++v++++f d ++ l+s++ D+++++Wd
F08G12.2 71 CENFSTIkGHSGAVMDLKFTTD-SSSLVSCGTDKSVRVWD 109
GlutR_N: domain 1 of 1, from 114 to 124: score 4.6, E = 4.2
*->svGKRVRtETa<-*
++++R+Rt+T+
F08G12.2 114 TCARRFRTHTD 124
Lipase_GDSL: domain 1 of 1, from 97 to 143: score 1.8, E = 9.1
*->v.CGnag.l.c.nvtakaC.npssyll.sflfwDgfHpsekGykavA
v+CG ++++ +++++ C + +++ + f +Hps G +vA
F08G12.2 97 VsCGTDKsVrVwDMETGTCaRR---FRtHTDFVNAVHPSRRGVTLVA 140
eal<-*
a
F08G12.2 141 SAS 143
WD40: domain 3 of 7, from 113 to 152: score 30.7, E = 6.1e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g+c + ++ Ht++v++v s + +++as+S+Dgt+++ d
F08G12.2 113 GTCARRFrTHTDFVNAVHPSRRGVTLVASASDDGTCRVHD 152
WD40: domain 4 of 7, from 156 to 193: score 18.2, E = 0.0022
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+e+++t++ t+v f+ + + +++sg+ D+ +k+Wd
F08G12.2 156 KEPVKTYtNR-YQQTAVTFNDS-SDQVISGGIDNVLKVWD 193
WD40: domain 5 of 7, from 197 to 235: score 43.6, E = 1.4e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
e ++tl+gH +++t ++ sp+ g++++s S D+t++ Wd
F08G12.2 197 DEITYTLtGHRDTITGISLSPS-GKFIISNSMDCTVRQWD 235
WD40: domain 6 of 7, from 263 to 285: score 12.2, E = 0.12
*->vafspdsgpylasgSrDgtiklWd<-*
+++sp +++ gS+D+ +++W+
F08G12.2 263 CSWSPC-ERFITAGSSDRFLYVWE 285
WD40: domain 7 of 7, from 289 to 327: score 25.3, E = 2.1e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ ++ l+gH ++v+c +f+p p+++s+++D+ + l +
F08G12.2 289 KKIVYKLpGHMGSVNCTDFHPK-EPIMLSCGSDKRVFLGE 327