Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09B12.3
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Query: F09B12.3 CE31469 status:Partially_confirmed TR:O62146 protein_id:CAB05478.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Laminin_A Laminin A 1220.2 0 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Laminin_A 1/1 11 578 .. 1 714 [] 1220.2 0
Alignments of top-scoring domains:
Laminin_A: domain 1 of 1, from 11 to 578: score 1220.2, E = 0
*->kllrelsavllalglltkqlstavvvsGlllskptgdlvtvkygaty
+l+r+l++v+++lg+l++++++++v++Glll+++++++++++++++y
F09B12.3 11 FLIRSLHSVFYYLGSLLHSTFEMNVFIGLLLATVVASQSSEGRDESY 57
vskdlCVsdtkelLLdvssgklclkallskkavAlanysnsvntTGWaiL
++k+lC++d+k+ +v++g++c++ + vA+a+++n+vntTGW++L
F09B12.3 58 TYKQLCIVDDKP---QVLDGFDCRN----Q--VAVARWQNAVNTTGWTFL 98
EvetneGfmkypdelQaYAAGvlEGslTrlliyyHwtYNtiesyCnndee
Evet+e +y+++lQaY+AG+lEG+l++++++yH++ N++e+yC+n
F09B12.3 99 EVETKE---NYCPQLQAYSAGYLEGLLSKTVLTYHLK-NAQEDYCKN--- 141
etgfCkkLkdfLeqNlkWmrqevrYmDAekapdDpYWrQvnltltQLdGL
+tg+C++L+dfL++N+kW++++++ ++apdD+YW++vn+t++Q++GL
F09B12.3 142 FTGYCSRLSDFLTENQKWIQSSLE----TVAPDDLYWGAVNRTYHQVSGL 187
idGYekRalepeidfeeeIklhpilmlnlaGDleDLkkalnktedpkDsr
id+Ye+R+++p+i++e lhpil+lnl+GD++DL+k+lnkt+dp+
F09B12.3 188 IDAYEGREFKPRITYE----LHPILYLNLNGDFYDLEKKLNKTRDPA--- 230
EHTEEPGkDQqmkffgpegGhCSaLVKvlPgneNVDllfaHvTwsSYstM
f+++gG+CS+L+Kv+Pgn+ Dl++++vT+s++++M
F09B12.3 231 --------------FEQTGGKCSGLIKVAPGNA--DLFISQVTMSGFQNM 264
LRiiKkYkFgyressklksnlVPGkfvtFRRLCSSYPGiliStDDFyils
LR+iK+YkFgy + PG +F SSYPG+l S DDF++
F09B12.3 265 LRVIKLYKFGY------DRQFYPGYASSF----SSYPGLLYSSDDFALQT 304
sgHLfLavlETTIsiFnyNltLlknvkPkgtVltWiRamvANrlArdgke
sg Lav+ETTIs ++N++L++n+kP+g+++tWiRa+v+N+lArd++e
F09B12.3 305 SG---LAVIETTIS--VFNTSLFENTKPVGQLPTWIRAIVSNQLARDARE 349
WasaFsRhNSGTYNNQWmVLDynKmKVKkNLYNVLEGDdftpnaplpkne
W++++s++NSGTYNNQW+VLDy Kk f+pn+plpk
F09B12.3 350 WCKLYSLYNSGTYNNQWAVLDY-----KK----------FKPNQPLPK-- 382
kdRTAiQQRHDQLRDvlwIlEQlPGTAPPLmivysDmTavLkkPGttYWa
++ ++++lEQ+PG +ivysD+T++++k ++Y++
F09B12.3 383 NG-------------LFYVLEQMPG-----KIVYSDLTWFVEK--YSYFP 412
SYNiPYFknVyelSGVNGtdklvekyGDwysYdksPRAkIFeRDhGnVtD
SYNiP+Fk+++e+S G++++++k+GDw+++++sPRAkIFeRDhGnV+D
F09B12.3 413 SYNIPFFKEITEIS---GFIGQAAKMGDWFKWGASPRAKIFERDHGNVHD 459
mdSmQkkLMRYNnYtkDlfsplskCdgAVGmDDDGNVTNVCnPnpYsAeg
+dS+ ++LMRYN+Y++ +++skC+ CnP pYsAe+
F09B12.3 460 LDSL-TALMRYNDYKN---DEFSKCK--------------CNP-PYSAEA 490
aIsaRgDLNppnGTyEfeglgfrdHgaasaiDeklDvKvtnvklakkmqf
+IsaRgDLNp+nGTyEf+g+g+++Hga lD+K+tnv+l+kk+qf
F09B12.3 491 GISARGDLNPANGTYEFPGQGHVNHGA-------LDYKGTNVELMKKLQF 533
iAvsGPprnttdkvPpRKiGSGPFkWSsespfeeklpHfGqPDlWnFsfV
+A++GP t++kvP+ FkW se++f++k++H+G+PD+W+F+++
F09B12.3 534 VAQGGP---TWGKVPS-------FKW-SEFDFKDKVNHVGHPDEWKFNTL 572
tmkTPiRPSGGSNSWrl<-*
++k W++
F09B12.3 573 VHK-----------WET 578