Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09B9.2a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F09B9.2a CE15759 locus:unc-115 LIM domains status:Confirmed TR:Q19240 protein_id:CAA90057.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LIM LIM domain 102.4 1.4e-27 3
VHP Villin headpiece domain 75.8 1.8e-23 2
IATP Mitochondrial ATPase inhibitor, IATP 5.5 6.6 1
DC1 DC1 domain 5.2 3 2
Xlink Extracellular link domain 2.2 2.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DC1 1/2 3 14 .. 1 12 [. 4.5 5.3
LIM 1/3 5 44 .. 1 43 [. 36.9 5.3e-09
DC1 2/2 29 45 .. 1 20 [. 3.3 12
VHP 1/2 51 60 .. 1 10 [. 0.7 1.2e+02
Xlink 1/1 137 142 .. 99 104 .] 2.2 2.2
LIM 2/3 117 173 .. 1 62 [] 57.0 1.1e-14
LIM 3/3 176 222 .. 1 51 [. 25.1 1.2e-05
IATP 1/1 526 550 .. 1 27 [. 5.5 6.6
VHP 2/2 590 625 .] 1 36 [] 72.4 2.5e-22
Alignments of top-scoring domains:
DC1: domain 1 of 2, from 3 to 14: score 4.5, E = 5.3
*->fsCdvCerkidp<-*
++CdvC++k+++
F09B9.2a 3 KKCDVCRKKCSG 14
LIM: domain 1 of 3, from 5 to 44: score 36.9, E = 5.3e-09
*->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefy<-*
C C k++ + ++ a++k++H++CF+C Cg++L+e++ fy
F09B9.2a 5 CDVCRKKCSGDVLK--ANDKYFHINCFQCKKCGRNLGETG-FY 44
DC1: domain 2 of 2, from 29 to 45: score 3.3, E = 12
*->fsCdvCerkidpgsngffYs<-*
f C C+r++ + +fY+
F09B9.2a 29 FQCKKCGRNLGE---TGFYT 45
VHP: domain 1 of 2, from 51 to 60: score 0.7, E = 1.2e+02
*->YLsdeDFeev<-*
YL ++DF+ v
F09B9.2a 51 YLCPDDFRAV 60
Xlink: domain 1 of 1, from 137 to 142: score 2.2, E = 2.2
*->YDvYCF<-*
++vYCF
F09B9.2a 137 WHVYCF 142
LIM: domain 2 of 3, from 117 to 173: score 57.0, E = 1.1e-14
*->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
Ca+C++ ++ +v+ al+ +wH+ CF+C++C L ++++ g
F09B9.2a 117 CAACDQALHSGQVLL-ALGLSWHVYCFKCSECSAVLHGE--YMSHHG 160
skelYCkhDyyklfg<-*
k ++C +Dy ++fg
F09B9.2a 161 -K-PLCLRDYNEKFG 173
LIM: domain 3 of 3, from 176 to 222: score 25.1, E = 1.2e-05
*->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
C+ C k I++ ++ a++ +Hp C rC+ Cg ++++g e y+ +
F09B9.2a 176 CYECEKFIAGKVLQ--AGGYKFHPTCARCSRCGSHFGDGEEMYMQGD 220
skel<-*
+ +
F09B9.2a 221 -E-I 222
IATP: domain 1 of 1, from 526 to 550: score 5.5, E = 6.6
*->msarGfgSdggegvggggGSiReAGGa<-*
+s+ ++S+ +++ g +G +R+AGGa
F09B9.2a 526 ISS--HYSEHSTTESGTAGGPRSAGGA 550
VHP: domain 2 of 2, from 590 to 625: score 72.4, E = 2.5e-22
*->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
+L++++Fee+F+M+ EFykLP+WK+ +LK+k++LF
F09B9.2a 590 HLPRDQFEEIFKMSLIEFYKLPEWKRINLKRKHKLF 625