Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09B9.2b
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Query: F09B9.2b CE02176 locus:unc-115 LIM domains status:Confirmed TR:Q95QM5 protein_id:CAC70079.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LIM LIM domain 102.4 1.4e-27 3
VHP Villin headpiece domain 75.8 1.8e-23 2
IATP Mitochondrial ATPase inhibitor, IATP 5.5 6.6 1
DC1 DC1 domain 5.2 3 2
Xlink Extracellular link domain 2.2 2.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DC1 1/2 17 28 .. 1 12 [. 4.5 5.3
LIM 1/3 19 58 .. 1 43 [. 36.9 5.3e-09
DC1 2/2 43 59 .. 1 20 [. 3.3 12
VHP 1/2 65 74 .. 1 10 [. 0.7 1.2e+02
Xlink 1/1 151 156 .. 99 104 .] 2.2 2.2
LIM 2/3 131 187 .. 1 62 [] 57.0 1.1e-14
LIM 3/3 190 236 .. 1 51 [. 25.1 1.2e-05
IATP 1/1 540 564 .. 1 27 [. 5.5 6.6
VHP 2/2 604 639 .] 1 36 [] 72.4 2.5e-22
Alignments of top-scoring domains:
DC1: domain 1 of 2, from 17 to 28: score 4.5, E = 5.3
*->fsCdvCerkidp<-*
++CdvC++k+++
F09B9.2b 17 KKCDVCRKKCSG 28
LIM: domain 1 of 3, from 19 to 58: score 36.9, E = 5.3e-09
*->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefy<-*
C C k++ + ++ a++k++H++CF+C Cg++L+e++ fy
F09B9.2b 19 CDVCRKKCSGDVLK--ANDKYFHINCFQCKKCGRNLGETG-FY 58
DC1: domain 2 of 2, from 43 to 59: score 3.3, E = 12
*->fsCdvCerkidpgsngffYs<-*
f C C+r++ + +fY+
F09B9.2b 43 FQCKKCGRNLGE---TGFYT 59
VHP: domain 1 of 2, from 65 to 74: score 0.7, E = 1.2e+02
*->YLsdeDFeev<-*
YL ++DF+ v
F09B9.2b 65 YLCPDDFRAV 74
Xlink: domain 1 of 1, from 151 to 156: score 2.2, E = 2.2
*->YDvYCF<-*
++vYCF
F09B9.2b 151 WHVYCF 156
LIM: domain 2 of 3, from 131 to 187: score 57.0, E = 1.1e-14
*->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
Ca+C++ ++ +v+ al+ +wH+ CF+C++C L ++++ g
F09B9.2b 131 CAACDQALHSGQVLL-ALGLSWHVYCFKCSECSAVLHGE--YMSHHG 174
skelYCkhDyyklfg<-*
k ++C +Dy ++fg
F09B9.2b 175 -K-PLCLRDYNEKFG 187
LIM: domain 3 of 3, from 190 to 236: score 25.1, E = 1.2e-05
*->CagCnkpIydrevvrralnkvwHpeCFrCavCgkpLtegdefyekdg
C+ C k I++ ++ a++ +Hp C rC+ Cg ++++g e y+ +
F09B9.2b 190 CYECEKFIAGKVLQ--AGGYKFHPTCARCSRCGSHFGDGEEMYMQGD 234
skel<-*
+ +
F09B9.2b 235 -E-I 236
IATP: domain 1 of 1, from 540 to 564: score 5.5, E = 6.6
*->msarGfgSdggegvggggGSiReAGGa<-*
+s+ ++S+ +++ g +G +R+AGGa
F09B9.2b 540 ISS--HYSEHSTTESGTAGGPRSAGGA 564
VHP: domain 2 of 2, from 604 to 639: score 72.4, E = 2.5e-22
*->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
+L++++Fee+F+M+ EFykLP+WK+ +LK+k++LF
F09B9.2b 604 HLPRDQFEEIFKMSLIEFYKLPEWKRINLKRKHKLF 639